Query= MSMg01no325_o05.b1 MSMg01no325_o05.b1 CHROMAT_FILE:
MSMg01no325_o05.b1 PHD_FILE: MSMg01no325_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
(211 letters)
>mm_chr4_26655017_26655627
Length = 611
Score = 331 bits (171), Expect = 2e-95
Identities = 198/207 (95%)
Strand = Plus / Minus
Query: 5 gaattcacttgtattccactagacctgcagttgctaaccttacatacatagcaacagacc 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gaattcacttgtaggcaactagacctgcagttgctaaccttacatacatagcaacagacc 419
Query: 65 caacttctttcccttttttgtctaaatgaaaatgattcttctcttataatatatgacata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 418 caacttctttcccttttttgtctaaatgaaaatgattcttctcttataatatacggcata 359
Query: 125 cagtatattatacttacaatatacagtaaaatctattgcaaagcaatttaaaaagttatt 184
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 358 cagtatactatacttacaatatacagtagaatctattgcaaagcaatttaaaaagttatt 299
Query: 185 tgttaaaagttccattcaaaaagtatg 211
|||||| |||||||||||||| |||||
Sbjct: 298 tgttaagagttccattcaaaatgtatg 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 611
Length adjustment: 9
Effective length of query: 202
Effective length of database: 602
Effective search space: 121604
Effective search space used: 121604
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no325_o05.g1 MSMg01no325_o05.g1 CHROMAT_FILE:
MSMg01no325_o05.g1 PHD_FILE: MSMg01no325_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
(614 letters)
>mm_chr4_26474437_26475450
Length = 1014
Score = 1106 bits (572), Expect = 0.0
Identities = 599/614 (97%), Gaps = 10/614 (1%)
Strand = Plus / Plus
Query: 1 gaaaaacagttttatatttcatatatgtgtttcaattaaaataaccgcagaggttgggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaaacagttttatatttcatatatgtgtttcaattaaaataaccgcagaggttgggta 260
Query: 61 gctggtaagggaccaggacatggactattttcaaaggtagaggaaattaaatatggtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctggtaagggaccaggacatggactattttcaaaggtagaggaaattaaatatggtgtt 320
Query: 121 ataatactattgaagaggaaagtagacttgaacgattaatttgggagtatgattaaaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataatactattgaagaggaaagtagacttgaacgattaatttgggagtatgattaaaggg 380
Query: 181 caggataaaggaggatatatgtgaaagagaaaagaacacaaaagtccttttgaaaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggataaaggaggatatatgtgaaagagaaaagaacacaaaagtccttttgaaaagaca 440
Query: 241 aatgaaaaccctgaatgctagtcggtaggattgagaggtagtttgcatggtaccagaatg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgaaaaccctgaatgctagtcggtaggattgagaggtagtttgcatggtaccagaata 500
Query: 301 tagcagttcccaactgcacactcaaattgtcctggaggcagcagcgactggtggatgctg 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 501 tagcagttcccaactgcacactcaaattgtcctggaggcagcagtgactggtggctgctg 560
Query: 361 ctgtgcacatcgcatgttctttgctacatgccccagtggtcttgcttcctgaatgaaaga 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 ctgtgcacatcgcatgttctttgctacatgccccagtgttcttgcttcctgaatgaaaga 620
Query: 421 cacacacacacacacacacacacacacacacacacacacacagagccatttattttaata 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 621 cacacacacacacacacacacacacacacaca----------gagccatttattttaata 670
Query: 481 tgccttaaacagctcaatggttggggcactcccaaacctccatgcggataacacactccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgccttaaacagctcaatggttggggcactcccaaacctccatgcggataacacactccc 730
Query: 541 ctccaatatttctgagttactaaactctattttcatattccacttttgtcatgctagatg 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 ctccaatatttctgagttactaaactctatattcatattccacttttgtcatgctagatg 790
Query: 601 cagtggcagtgggg 614
||||||||||||||
Sbjct: 791 cagtggcagtgggg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
