BAC Information

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BAC

Clone NameMSMg01-326A01
Chromosome4 (Build37)
Map Location 18,839,004 - 18,839,380
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326A01.T7 (MSMg01no326_a01.b1)MSMg01-326A01.TJ (MSMg01no326_a01.g1)
ACCAG443740AG443741
length749747
length of high quality
(start - end)
517 (72 - 588)610 (76 - 685)
definitionCHROMAT_FILE: MSMg01no326_a01.b1 PHD_FILE: MSMg01no326_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:37 2005CHROMAT_FILE: MSMg01no326_a01.g1 PHD_FILE: MSMg01no326_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGAGCGCGCG
GAATTCAGTCAGCTTATCTACATTCAATTAGTTTTTAAAAAAGAAAGAGA
ATATTACAATTCAAGAGAATTCAGTCCACAGACATACATTCAATTAGTTT
AAAAAAGAAAGAGAATATTACAATCCATGGTTAAGGAGGTGGGGTTGGTT
TGGGAGGAGTTGGGAAAATGTGATCAAAATATACTATGAAATTCTTAAAG
AAATAATAAAATATTATTTTTTAATTTTGAAGGAAAATATCTCTTCTTTT
CATAAAATTCAACCTACTCTTCTTGAGAGTCTTCTTTGGTATTTTTAAAC
AAGGCATATACCATTACAAAAGAAAGGATGGCTCACTAGGGAGACTTGCA
TTTTTCACTGCAACTCCTCTTGGATACTGTGACACACTGGTCATGTTCCT
TGGAAGATATCTCCCCCCCCCCCCCCGAGCATTCCTCCCAGATGAAGCAC
TTATAAATGCTAATATTGCATGCATTAATTCAGACCATGTTATTGGTCAT
GCATTAAAATTGCAATCTAAATTAAAAATATATTCCTGTGGCAATCAGAG
TCTTCCTGGGGTGGTAGATTTTCTGCATATGTGCTGCAGTTGTTTAACTT
TGGTTTTGGTGAGACTCCTTACAGAGGGAGTGGGGTATCTCTGAACATTT
TGCCTGTCTTTTTTGCTTGCTTGCTTGGTTTGTTTTTTTAATCAGATAT
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTATTTCCATACCCCATTTT
TTGATTGGGTTGTTTGGATTTTTGGTGGTTAGCTTCTTGAGTTATTTATA
TATTTTGGATACTAGCCCTCTGATGGATTGGGGTTAGTGAAGAATTTCTC
CCAATCTGTAAGTTGCTGATTTGTCTTATTGGCTATGTATTTTGCCTTAC
AAAGCTTTTCAGTTTCCTGAGGTTCCTTTTATCCATTTTTAATCTTAGAA
CATGAGTCCTTGGAGTTCTGTTTAGAAACTTTCCCCTGTGCCAATGAGTT
CCAGGCTCTTTCCCACTTTCTCTTCTGTTAGATTCAGTGCATCTGTTTTT
ATGATAAGGTCCTTGATGCACTTGGACTTGAGCTTTGTGCAAGGTTAAAA
TGACTTCACTTTCATTTTTCTACATATGGACAGCAATTTAGGCCAGCATC
ATTTCTTGAAGATACTTTCTTTTTTCCAGTGAATATGTTTGCCTTCTTTG
TCAAAGATTTGTGTCCATAAGTGTGTGCTTTTATTTGTGGGTTTTCAATT
ATATTCCATTGATCAACCTATCTGTCTCTGCCATGCAGTTTTTAATCTCT
ACTATCCTGTAGTAAAACTTGAGGACAGATATGGTGATTTTCCCCAGCCA
TTCTTTCATTATTAAGTAATGGTTTTGCTATTCTGTTTCTTGTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_a01.b1 MSMg01no326_a01.b1 CHROMAT_FILE:
MSMg01no326_a01.b1 PHD_FILE: MSMg01no326_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:37 2005
         (517 letters)



>mm_chr4_18839004_18839918
          Length = 915

 Score =  692 bits (358), Expect = 0.0
 Identities = 374/380 (98%), Gaps = 4/380 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaattagtttttaaaaaagaaagagaatattacaattcaagagaattcagtcca-ca 59
           ||||||||||  |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 377 attcaattag--tttaaaaaagaaagagaatattacaattcaagagaattcagt-cagca 321

                                                                       
Query: 60  gacatacattcaattagtttaaaaaagaaagagaatattacaatccatggttaaggaggt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gacatacattcaattagtttaaaaaagaaagagaatattacaatccatggttaaggaggt 261

                                                                       
Query: 120 ggggttggtttgggaggagttgggaaaatgtgatcaaaatatactatgaaattcttaaag 179
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 260 ggggttggtttgggaggagttgggaaaatgtgatcaaaatacactatgaaattcttaaag 201

                                                                       
Query: 180 aaataataaaatattattttttaattttgaaggaaaatatctcttcttttcataaaattc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaataataaaatattattttttaattttgaaggaaaatatctcttcttttcataaaattc 141

                                                                       
Query: 240 aacctactcttcttgagagtcttctttggtatttttaaacaaggcatataccattacaaa 299
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 aacctagtcttcttgagagtcttctttggtatttttaaacaaggcatataccattacaaa 81

                                                                       
Query: 300 agaaaggatggctcactagggagacttgcatttttcactgcaactcctcttggatactgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  agaaaggatggctcactagggagacttgcatttttcactgcaactcctcttggatactgt 21

                               
Query: 360 gacacactggtcatgttcct 379
           ||||||||||||||||||||
Sbjct: 20  gacacactggtcatgttcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 915
Length adjustment: 10
Effective length of query: 507
Effective length of database: 905
Effective search space:   458835
Effective search space used:   458835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)