Query= MSMg01no326_k12.b1 MSMg01no326_k12.b1 CHROMAT_FILE:
MSMg01no326_k12.b1 PHD_FILE: MSMg01no326_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:24 2005
(677 letters)
>mm_chr4_39466626_39467702
Length = 1077
Score = 1257 bits (650), Expect = 0.0
Identities = 667/673 (99%)
Strand = Plus / Minus
Query: 5 gaattccatagtctctacagggtctcgcatcacagggcatcgaaatttacaaaattggag 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattccataggctctacagggtctcgcatcacagggcatcgaaatttacaaaattggag 818
Query: 65 aataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtgatttttcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 aataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtgatttttcaca 758
Query: 125 aagcacacatatcctcccacaggatgctaaacattcttccaatctatgtgaatcatgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aagcacacatatcctcccacaggatgctaaacattcttccaatctatgtgaatcatgcag 698
Query: 185 tgggtatccagcagagacaaaccccttagactcaggacttgttagagcatgtgcagctat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgggtatccagcagagacaaaccccttagactcaggacttgttagagcatgtgcagctat 638
Query: 245 tcggagaactttttccccattaagatagaaaaagtatatacagccagtgtgtatggagac 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctgagaactttttccccattaagatagaaaaagtatatacagccagtgtgtatggagac 578
Query: 305 tcaggtggcctttagggatctgagagactcaaagatgtcaaggcactatataaaatttaa 364
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 577 tcaggtggcctttagggatctgagagactcaaagatgttaaggcactatataaaatttaa 518
Query: 365 agctatacaacacaacttgacatctgtacactctgacttctgtcaaggcctcctaaagga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agctatacaacacaacttgacatctgtacactctgacttctgtcaaggcctcctaaagga 458
Query: 425 atcataaatgttcttccttttgtttttccctaatcggcatttgaacaacattctgttagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 atcataaatgttcttccttttgtttttccctaatcggcatttgaacaacattctgttagc 398
Query: 485 atctaaagtgagacagacttccttctgcttcactgccttcatcccagtgtaacataggga 544
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 atctaaaatgagacagacttccttctgcttcactgccttcatcccagtgtaacataggga 338
Query: 545 tgttaggcattttcatgtttttaaatacatgaaacattcatatatgctaattttcttgcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgttaggcattttcatgtttttaaatacatgaaacattcatatatgctaattttcttgcc 278
Query: 605 aaatctcacaaaactattgtattaaaaatgagagaaagtgtttataanaaggtgtgattg 664
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 277 aaatctcacaaaactattgtattcaaaatgagagaaagtgtttataaaaaggtgtgattg 218
Query: 665 cttatttcttcaa 677
|||||||||||||
Sbjct: 217 cttatttcttcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_k12.g1 MSMg01no326_k12.g1 CHROMAT_FILE:
MSMg01no326_k12.g1 PHD_FILE: MSMg01no326_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:24 2005
(632 letters)
>mm_chr4_39292574_39293606
Length = 1033
Score = 1087 bits (562), Expect = 0.0
Identities = 616/634 (97%), Gaps = 2/634 (0%)
Strand = Plus / Plus
Query: 1 agtcatcaacaaaaa-tgctatgaagagattttcaagtgaggccacgtagaaaatgttct 59
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agtcatcaataaaaaatgctatgaagagattttcaagtgaggccacgtagaaaatgtcct 260
Query: 60 tatattcagaaggaaaaagaactgagcagattcttgacagtagtctcatattcaaacctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatattcagaaggaaaaagaactgagcagattcttgacagtagtctcatattcaaacctg 320
Query: 120 tcaaacgttgtttgtgctagatctcaaatactgtcttttcagacataataacaaagtgaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaacgttgtttgtgctagatctcaaatactgtcttttcagacataataacaaagtgaa 380
Query: 180 tgtcccatcataatgtgtgtggaagcacagttatggtcaaaggctcccaattgtttccaa 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 tgtcccatcataatgtgtgtggaagcacagttatggtcaaaggcttccaattgtttccaa 440
Query: 240 aatattacaagtatttgcttgctaatatgagcttattatacatagatttatttaatactt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatattacaagtatttgcttgctaatatgagcttattatacatagatttatttaatactt 500
Query: 300 tctgtttaaccacaaaaggtagggtctggaaatatagctcagccgctgagagcactagcc 359
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 tctgtttaaccacaaaaggtagggtctggaaatatagctcagtggttgagagcactagcc 560
Query: 360 gctcttccagaggacctgggtttgatttccagcacccttatggcagctcacaaccttctg 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcttccagaggacctgggtttgatttccagcacccttatggcagctcacaaccttctg 620
Query: 420 taattccagtcccagggcagtcaagtgctcttgttgggatcaatgggcaccagaaatgca 479
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 taagtccagtcccagggcaatcaagtgttcttgttgggatcaatgggcaccagaaatgca 680
Query: 480 aatgatgaacagacatatacgcaggaaaaacacacaaacaacaattaaaataatttaaat 539
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 681 aatgatgaacagacatatacgcaggaaaaacacacaaacaacaattaaaagattttaaat 740
Query: 540 ggtgaaagatttatataatataaagaaaaaccacaatatataaaactagttttcttctct 599
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 741 ggtgaaagatttatataatataaagaaaaaccacagtatataaaactagttctcttctct 800
Query: 600 tgcttttcttccttctttccttc-ttccttcctt 632
|||||||||||| || ||||||| ||||||||||
Sbjct: 801 tgcttttcttccctccttccttccttccttcctt 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
