BAC Information

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BAC

Clone NameMSMg01-326O16
Chromosome4 (Build37)
Map Location 37,892,054 - 37,892,599
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448, LOC665520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326O16.T7 (MSMg01no326_o16.b1)MSMg01-326O16.TJ (MSMg01no326_o16.g1)
ACCAG444411AG444412
length728736
length of high quality
(start - end)
553 (45 - 597)484 (77 - 560)
definitionCHROMAT_FILE: MSMg01no326_o16.b1 PHD_FILE: MSMg01no326_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:42 2005CHROMAT_FILE: MSMg01no326_o16.g1 PHD_FILE: MSMg01no326_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAATGTTCGTGAAATGACATAGTTGATACTACTGTATATACCAAC
TTTCTCTGGCTATGATTTTAACCAAAATGCCTTTAAATACCTTTATAATA
CTACAGTGAAATGTATAGTAATTTATTCAATGTATCAAATTATCATTTAT
TATAGATTGTATGTACTTCATGTTGCAACGTTAAAATTTGGCTTTCACAC
CCAATTCTCGTTGTATTTTATAAACCTAACAGTGGCAAACAAGTATATAT
TGATTGACAGCCCTGTAATACTGTCTGACATTTAATAGACAGTTTGATTT
TATTTGTTGAATAACATTTTGTTGTGTATTGCTGTTTGTATTTTCTACTC
CATCAATAGGGGCGACCCAAGGAGGAGTAGATCACATATTCAGGTGAGCT
CAGGTTAAATATTAATTGGTCAGATAAGGTTAGAGCCTATGATTGTGTAA
TGAAAGAAAAATGTAGAGCTCAAAGTTTTGGAGAGAGGAAAGAGGAAGAA
GAGTGTCATACAAGATTAAGTATGGAGGGGGAAGAGATGGATGGAGAGTT
GAAGATCAACCTAAAACATGTGCCCTGCAGGAGATGCAAGTAGCTAGGGA
TTTCACAGATGGGGTAGGGTACATTTTCCCAGACTAGGTGTGCAACTTGT
ATTTATATAAATTGAGTTTTGTGGTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCCTAGTCACTCCCATTCTTGG
GGTGTAATAGTGGGGGGATGGGCAAGCAACAAATCAGGAGCTGTCACGCC
ATATCAGGTGCTGAAACGTCACGCTGCAGGTTATAAAAGCAGCGCAATTT
TCCCGGTTCGGGGTCTTCCTGAGAAGCAAGCAATAAAGCTTTTGCCGCGG
AAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGTCGAGCGGGACGCAATAC
ATGTGAGGCTATATCAGTGCCTGTCAAACACAGAAGTGGATGATCTCAGT
CATCTATTGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGAGAAACTA
TTCAAGGAGCTGAAGGGGCCCGCAATCCTATAGGTGGAGCAACAATATGA
ACTAACCAGTATCCCCAGAGCTTGTGTATCTAGCTGCATATGTAACACAA
GATGGCCTGAGCAGATCATCATTGAGAAGAGAAGCCCCTTGGTCTAGCAA
ACTTTATATGCACCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTG
GGTAGGTAGGGGAGCAGGGCAAAGGGAGGGTATAGGGGACTTTCGGAGGA
GCATTTGAAATGTAAGTGAAGAAGATATCTAATAACAACATGAAACAGAT
TAGGTCTACTACGTATCTAAAAATAAAAAGAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_o16.b1 MSMg01no326_o16.b1 CHROMAT_FILE:
MSMg01no326_o16.b1 PHD_FILE: MSMg01no326_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:42 2005
         (553 letters)



>mm_chr4_37891850_37892802
          Length = 953

 Score = 1000 bits (517), Expect = 0.0
 Identities = 540/549 (98%), Gaps = 3/549 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaatgttcgtgaaatgacatagttgatactactgtatataccaactttctctg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaatgttggtgaaatgacatagttgatactactgtatataccaactttctctg 264

                                                                       
Query: 65  gctatgattttaaccaaaatgcctttaaatacctttataatactacagtgaaatgtatag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gctatgattttaaccaaaatgcctttaaatacctttataatactacagtgaaatgtatag 324

                                                                       
Query: 125 taatttattcaatgtatcaaattatcatttattatagattgtatgtacttcatgttgcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taatttattcaatgtatcaaattatcatttattatagattgtatgtacttcatgttgcaa 384

                                                                       
Query: 185 cgttaaaatttggctttcacacccaattctcgttgtattttataaacctaacagtggcaa 244
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 385 cgttaaaatttggctttcacacccaattctcattgtattttagaaacctaacagtggcaa 444

                                                                       
Query: 245 acaagtatatattgattgacagccctgtaatactgtctgacatttaatagacagtttgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaagtatatattgattgacagccctgtaatactgtctgacatttaatagacagtttgat 504

                                                                       
Query: 305 tttatttgttgaataacattttgttgtgtattgctgtttgtattttctactccatcaata 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 505 tttatttgttgaataacattttgttgtgtattgctgtttgtattttttactccatcaata 564

                                                                       
Query: 365 ggggcgacccaaggaggagtagatcacatattcaggtgagctcaggttaaatattaattg 424
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 565 ggggtgacccaaggaggagtagatcacatattcaggtgagctcaggttaaatattatttg 624

                                                                       
Query: 425 gtcagataaggttagagcctatgattgtgtaatgaaagaaaaatgtagagctcaaagttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtcagataaggttagagcctatgattgtgtaatgaaagaaaaatgtagagctcaaagttt 684

                                                                       
Query: 485 tggagagaggaaagaggaagaagagtgtcatacaagattaagtatggagggggaagagat 544
           |||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggagagaggaaagaggaaga---gtgtcatacaagattaagtatggagggggaagagat 741

                    
Query: 545 ggatggaga 553
           |||||||||
Sbjct: 742 ggatggaga 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)