BAC Information

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BAC

Clone NameMSMg01-326P15
Chromosome4 (Build37)
Map Location 102,510,781 - 102,698,538
singlet/doubletdoublet
Overlap geneSgip1, Tctex1d1, Insl5
Upstream geneB020004J07Rik, LOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneWdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326P15.T7 (MSMg01no326_p15.b1)MSMg01-326P15.TJ (MSMg01no326_p15.g1)
ACCAG444456AG444457
length731724
length of high quality
(start - end)		305 (425 - 729)653 (72 - 724)
definitionCHROMAT_FILE: MSMg01no326_p15.b1 PHD_FILE: MSMg01no326_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:46 2005CHROMAT_FILE: MSMg01no326_p15.g1 PHD_FILE: MSMg01no326_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,698,234 - 102,698,538)(102,510,781 - 102,511,433)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGCACCTCACTTATTTTTCTAGAACCCCCTTTTTAACCACCCCA
CCCCAACCCCAATTTTCTTAGTATTTCTCTAAGAAATTCTGATCCAGTTG
TATATCAATGTAGGGGCTTAATCATCAAAATATATTACGGAATTTGGCCT
GGGAAAAAGGCAAACGTGCTACATTTTAAAAAGCAACACACTGCCATTCT
TTAGTCTTTTGAATAAAACCGGTTCATTGCACGGGGCTTAAGTGAGCTCA
GCATCTGTGGGCAGAGCAATGAAGGCTGTAGAGGCCAGACATCTACCTGC
ACACAGATGATGACAGAATGTATCAAGTTAGAGTTCAGGCAAGTGCCAGA
CAAGGGTAAAGCGGAGGACCCGACTCAGCTGACCACGTATTAAGTACCAG
GCAATTTCAGGGGCAACACATCACTTAGCTCTCCGGTGAAGTAACTCATG
CTACTGCTGCTGGTTATCATTTATTAAGGACAAAACTGTTTACCCAGCCG
TTCAGCAGTGAGGCCAGAAAACAAGCCAGGCCTACCTGCTTCAGGAACTG
ATGTCATTGCTATTACATACTGTGCCCCAGGTGAAGAGAAGGCTTCTGTA
GATACTTACATCACAGAGAAGGTAGAATTTGACAGAGGTCCTGAAGGGCC
TGTCAAACTGAGAAGTTGTGGGGCAGGAATN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATACTTTCCTTTTACATTATATGCACCT
CTGGGGCTTACTATTTTCTTACCCTTGATAAAAATGATAATAAAATTACA
TAAATAAATGATGGCTTGTACTCAGGCAGCTCTCTCTATATACAAATATA
TCTTCTCATTTACTAGTGTAGTCATTTGATGCATATAATTTACAGTCACA
GAAATTCAATTCTTAAGAAATGATTTTTCTGACATATCGCATAGATAGTC
AGTGGTGAAGCTAGAATCATATTTCAGATCTGATTGGCAAAGTGAGACAA
AACTGAAGGAGTTGAGTCTACAAGCTATGAGGGGGGTCCATAAGACGAAC
CACATGGGACTGCCACACCCGACAACATTACACATCCTGTCACAACCCAA
AAGTGCTTATGAGATAAGAAATGCTTTAGTGTTCAGCTGTGCCAGAAAAT
TAAGTGTTTTACTAGGAGTTTGTGTTTCTTCAGGAAGACAGAACTCAAAC
ACTTGTTTTCAAATAATTATGTATCACAGTACTCTGCCATTTGATGAACT
AGGAAACACTAGTTTCTTGCTTATCAATATGGCCACACTACCAATGGATT
CCTATTATTCTGGAGCTTTTTGGTCCCAGGTAATAGATATTGCTGGGGAA
TTAAACAGACTCCTGATACATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_p15.b1 MSMg01no326_p15.b1 CHROMAT_FILE:
MSMg01no326_p15.b1 PHD_FILE: MSMg01no326_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:46 2005
         (305 letters)



>mm_chr4_102698034_102698738
          Length = 705

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagctgaccacgtattaagtaccaggcaatttcaggggcaacacatcacttagctctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcagctgaccacgtattaagtaccaggcaatttcaggggcaacacatcacttagctctcc 446

                                                                       
Query: 61  ggtgaagtaactcatgctactgctgctggttatcatttattaaggacaaaactgtttacc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtgaagtaactcatgctactgctgctggttatcatttattaaggacaaaactgtttacc 386

                                                                       
Query: 121 cagccgttcagcagtgaggccagaaaacaagccaggcctacctgcttcaggaactgatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagccgttcagcagtgaggccagaaaacaagccaggcctacctgcttcaggaactgatgt 326

                                                                       
Query: 181 cattgctattacatactgtgccccaggtgaagagaaggcttctgtagatacttacatcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattgctattacatactgtgccccaggtgaagagaaggcttctgtagatacttacatcac 266

                                                                       
Query: 241 agagaaggtagaatttgacagaggtcctgaagggcctgtcaaactgagaagttgtggggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agagaaggtagaatttgacagaggtcctgaagggcctgtcaaactgagaagttgtggggc 206

                
Query: 301 aggaa 305
           |||||
Sbjct: 205 aggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no326_p15.g1 MSMg01no326_p15.g1 CHROMAT_FILE:
MSMg01no326_p15.g1 PHD_FILE: MSMg01no326_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:47 2005
         (653 letters)



>mm_chr4_102510581_102511633
          Length = 1053

 Score = 1224 bits (633), Expect = 0.0
 Identities = 648/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatactttccttttacattatatgcacctctggggcttactattttcttacccttgataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatactttccttttacattatatgcacctctggggcttactattttcttacccttgataa 260

                                                                       
Query: 61  aaatgataataaaattacataaataaatgatggcttgtactcaggcagctctctctatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgataataaaattacataaataaatgatggcttgtactcaggcagctctctctatat 320

                                                                       
Query: 121 acaaatatatcttctcatttactagtgtagtcatttgatgcatataatttacagtcacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaaatatatcttctcatttactagtgtagtcatttgatgcatataatttacagtcacag 380

                                                                       
Query: 181 aaattcaattcttaagaaatgatttttctgacatatcgcatagatagtcagtggtgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattcaattcttaagaaatgatttttctgacatatcgcatagatagtcagtggtgaagc 440

                                                                       
Query: 241 tagaatcatatttcagatctgattggcaaagtgagacaaaactgaaggagttgagtctac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaatcagatttcagatctgattggcaaagtgagacaaaactgaaggagttgagtctac 500

                                                                       
Query: 301 aagctatgaggggggtccataagacgaaccacatgggactgccacacccgacaacattac 360
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 501 aagctatgaggggggtccataagacgaaccacatgggactgccacagttgacaacattac 560

                                                                       
Query: 361 acatcctgtcacaacccaaaagtgcttatgagataagaaatgctttagtgttcagctgtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatcctgtcacaacccaaaagtgcttatgagataagaaatgctttagtgttcagctgtg 620

                                                                       
Query: 421 ccagaaaattaagtgttttactaggagtttgtgtttcttcaggaagacagaactcaaaca 480
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagaaaattaagtgttttactgggagtttgtgtttcttcaggaagacagaactcaaaca 680

                                                                       
Query: 481 cttgttttcaaataattatgtatcacagtactctgccatttgatgaactaggaaacacta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttgttttcaaataattatgtatcacagtactctgccatttgatgaactaggaaacacta 740

                                                                       
Query: 541 gtttcttgcttatcaatatggccacactaccaatggattcctattattctggagcttttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtttcttgcttatcaatatggccacactaccaatggattcctattattctggagcttttt 800

                                                                
Query: 601 ggtcccaggtaatagatattgctggggaattaaacagactcctgatacatttt 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtcccaggtaatagatattgctggggaattaaacagactcctgatacatttt 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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