BAC Information

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BAC

Clone NameMSMg01-327B18
Chromosome4 (Build37)
Map Location 6,203,142 - 6,203,406
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
Downstream geneSdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327B18.T7 (MSMg01no327_b18.b1)MSMg01-327B18.TJ (MSMg01no327_b18.g1)
ACCAG444553AG444554
length747749
length of high quality
(start - end)		372 (47 - 418)269 (150 - 418)
definitionCHROMAT_FILE: MSMg01no327_b18.b1 PHD_FILE: MSMg01no327_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:56 2005CHROMAT_FILE: MSMg01no327_b18.g1 PHD_FILE: MSMg01no327_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAACTGATACCTACTGAATGGCTGAGAAGAATCTGAAAAATTT
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAATCTCAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCGAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGAGGATGTGGAGAAAGTTGCACACTCCTCCACTGCT
GATGGGATTGCAAGCTGGTACAACAACTCTGGAAATCAGTCTGGCCATTC
CTCAGAAAACTGGTCATAGGACTACCAGTAGATCCAGCAATTCCTCTCCT
GGATATATGCCCAGAAGATGTTCCAACTTCTAATAAGGACACATGATCCA
CTAATTTTATAGCAGCCGGACCCCCCCATTTCAGAAGCTGGAAAGAACCC
AGATATCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGAGTACTACTTAGCAATTAAAAACAATTAATTTATGAAATTTTTAG
GCAAATGGATGGATTTGGAGGATATCATCCTGTGTGAGGATCTAATCACA
AAAGAACACACATGATATGCACTCACTGATAAGTGGATATTAGCCCAGAA
ATTTAGAATACCCAAGATACAATTTACAAAACATGTGAAATTGAATAAGA
AGGAAGACCAAAGTGTGGTCTTCTTACTTGGATCCTTCTTAGAAAGN

NNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CAAGCTATGGCTGCCTAGAAGACGAGTGCTGGGAGGTTTCCTATTTCGAC
GATAGTAGATAGACTACGTGAAGCACCTGTGGTTTTATAAACACACTGAA
CAATCAAGCAAAAACAAACAAACAAACAAAGAAACAAACAAAACAAACTG
TTCCACACCGTTCACATCCTTTAGGATCTGTTGCTGTATACTTCTGGAAA
TTAATTTAAATAATTTTCCCCAAAGGTTAATGACATGGACAGCCAGTATT
AAAGCCAGGATGGAAAGCTCCCGCCCCGCCTGCTTTACATCACACTCCAC
ATCTTTGGTAGGTGAGCTCTTCTGTAGTGTGTTTACTTCTTTTTCTACAC
ACAGAAGCACAGTGTTAGCTGTTGTCCCCAGCTTTGAATGTTATGTCAGC
ACATGAGGGACAGACCTTCGGCTTATCGACTATTGCAGCTCTCTGCTTGT
TCTGGAGCCTCTTCTGAGAAGATGGACTTAGTTCAAGGCCAGATTAATGC
CATTTCTTTCACTTTTCTTCTTTCTTTTTTCTAGTATGACCAACTATTTA
TCTGTTCGCCTGTCCCACCCATGCTCATTTATTGTATTTCGTTTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_b18.g1 MSMg01no327_b18.g1 CHROMAT_FILE:
MSMg01no327_b18.g1 PHD_FILE: MSMg01no327_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:57 2005
         (269 letters)



>mm_chr4_6202793_6203461
          Length = 669

 Score =  462 bits (239), Expect = e-135
 Identities = 260/269 (96%), Gaps = 4/269 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaagctatggctgcctagaagacgagtgctgggaggtttcctatttcgacgatagtaga 60
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 614 tcaagctatggctgcctagaagatgagtgctgggaggttttctatttcgacgatagtaga 555

                                                                       
Query: 61  tagactacgtgaagcacctgtggttttataaacacactgaacaatcaagcaaaaacaaac 120
           |||||||| |||||||||||||| ||||||||||||||||||||||||||||    ||||
Sbjct: 554 tagactacatgaagcacctgtggctttataaacacactgaacaatcaagcaa----aaac 499

                                                                       
Query: 121 aaacaaacaaagaaacaaacaaaacaaactgttccacaccgttcacatcctttaggatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 498 aaacaaacaaagaaacaaacaaaacaaactgttccacaccgttcacatcctttaggatcg 439

                                                                       
Query: 181 gttgctgtatacttctggaaattaatttaaataattttccccaaaggttaatgacatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gttgctgtatacttctggaaattaatttaaataattttccccaaaggttaatgacatgga 379

                                        
Query: 241 cagccagtattaaagccaggatggaaagc 269
           |||||||||||||||||||||||||||||
Sbjct: 378 cagccagtattaaagccaggatggaaagc 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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