Query= MSMg01no327_d08.b1 MSMg01no327_d08.b1 CHROMAT_FILE:
MSMg01no327_d08.b1 PHD_FILE: MSMg01no327_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
(259 letters)
>mm_chr4_27593063_27593721
Length = 659
Score = 464 bits (240), Expect = e-135
Identities = 255/260 (98%), Gaps = 1/260 (0%)
Strand = Plus / Plus
Query: 1 caaaagtaatagaagttgtgactgtcctatttatatgattttttaaacctaaaaccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 caaaagtaatagaagttgtgactgtcctatttatatgattttttaaacctaaagccatgt 260
Query: 61 gattatcatctcatgtacttgtcatgctgaacttatgtgctgagtttcaacaatagatca 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gattatcatctcatgtacttgtcatgctgaacttatatgctgagtttcaacaatagatca 320
Query: 121 gtattgagtagacagtggccttgatgacatgaacttatttcacaaatagatataataaat 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattgagtagatagtggccttgatgacatgaacttatttcacaaatagatataataaat 380
Query: 181 aaatattaatcaaaataaatattttgaagattatataatgaatcataattacctatagta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aaatattaatcaaaataaatattttgaagattatataatgaatcataattacctatggta 440
Query: 241 tgaa-tttgaaaaatatcta 259
|||| |||||||||||||||
Sbjct: 441 tgaaatttgaaaaatatcta 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no327_d08.g1 MSMg01no327_d08.g1 CHROMAT_FILE:
MSMg01no327_d08.g1 PHD_FILE: MSMg01no327_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:04 2005
(345 letters)
>mm_chr4_27743406_27744150
Length = 745
Score = 613 bits (317), Expect = e-180
Identities = 337/345 (97%), Gaps = 3/345 (0%)
Strand = Plus / Minus
Query: 1 tcatttaccagagaatgatgtgaacatcttgccttttctctaaatataataattatttga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 471 tcatttaccagagaatgatgtgaacatcttgccttttctataaatataataattatttga 412
Query: 61 ttttaaattatgcaacattaaaataaatcataacattcacgaagagaaaagcatagaggt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 411 ttttaaattatgcaacattaaaataaatcataacattcacaaagagaaaagcatagatgt 352
Query: 121 actaaaggcaggtagaaagggcattgtgaatatagtggtttcctgatttttgtatcaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 actaaaggcaggtagaaagggcattgtgaatatagtggtttcctgatttttgtatcaaca 292
Query: 181 ggatattgaccctaaatgtgactatcgtcatttctctaaaacagtgtgatttctgactat 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 291 ggatattgaccctaaatgtgactatcgtcatttctctaaaacagtgagatttctgactat 232
Query: 241 gttctaaccacttatttttatacccataaacatggtttttacctttcaaagaagtttctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gttctaaccacttatttttatacccataaacatggtttttacctttcaaagaagtttctt 172
Query: 301 tttataatatacagatgacattataggaagccatgactggttata 345
|||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 171 tttataatatacagataacat---aggaagccatgactggttata 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space: 247296
Effective search space used: 247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
