BAC Information

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BAC

Clone NameMSMg01-327E08
Chromosome4 (Build37)
Map Location 6,826,497 - 6,826,834
singlet/doubletsinglet
Overlap geneTox
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327E08.T7 (MSMg01no327_e08.b1)MSMg01-327E08.TJ (MSMg01no327_e08.g1)
ACCAG444674AG444675
length734724
length of high quality
(start - end)
354 (71 - 424)338 (77 - 414)
definitionCHROMAT_FILE: MSMg01no327_e08.b1 PHD_FILE: MSMg01no327_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:09 2005CHROMAT_FILE: MSMg01no327_e08.g1 PHD_FILE: MSMg01no327_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTACCTGTTTCCATACCGAATGGCTGAGAAGCACCTCAAAAAATG
TTCAGCATCCTTAATCATCAGGGAAATGCAAATCACAACAACCCTGAGAT
TCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCTAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTACAAGCTTCTACAATCACTCTGGAAATCAGTCTGGGGGTTCCTCA
GAAAATTGGACATAGTACTACCGTAGGATCCTGCAATACCCCTCCTGGGC
ATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACATATGCTCCACTAT
GTTCATAGCAGCCTCATTTATGCCACCACCCACCCGGAAACAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGCGGTACATTTACACAATG
GAGTACTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGG
CAAATGGATGGACCTGGAGGGCATTATCCTGAGTGAGGTAACACACTCAC
AATATAACTCACATGATATGTACTCATTGATAATTGGATATTAGCCCATA
AACTTATTATACCCGGGATATAAGATACAATTTTGCAAAAAAATGATACT
CAAGAATAATGACGACCAAAGTGTGTGCACTTTG
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAACAATACTTTGGGAGAGCTCT
CTTGGAGAATTCAGCTTACTGTTTAACAGTTTCTGACTAATTTTATTAAC
CTGTACATCTGAGAGGATCAACCCCCTCTGGGTTTAATTAGAAGGAAATT
CAATTTGGATCTAAATGTCAACAGTGGTTACTAATTATGGCAACGCTCGG
GACAGGACAGCCTGGCTGCAATCAGGCAGGTTCCTAGTAACATTTACGCC
TTCTTTCTGAGTTCCGAGAGAGTTTGGATGTTTTAAAATAAATACAATTC
AGCATGGGACACTGCTAATATCATGAGCCCCTACTGCTAGGTGCAGACAT
GCAGAAGTGGATGCCAAATTACCCCACCCCCACCTCTCAAACATATAGCT
GAATAATAAGCAGCTACAAAACTAGGTCAGGGTTGAAAAGCTGGCTCCGA
ATGCCCCTCCCCCAACATGCAAAATAAATACCCCACTATCTCTGAATAGA
AATCATTCTTTTGTTATGCCCTTTGTCAAGAATACATTATTGCAAAATGA
TATTTATTTCCACAATCTTCACAGCTGTGAGCACAACTAAATTAATCTTT
CTAGAACTGATTTCATTTGTTATTTCATGATTACGATTATAAAATGTAAA
TTTATTACTTAATAAAGATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_e08.g1 MSMg01no327_e08.g1 CHROMAT_FILE:
MSMg01no327_e08.g1 PHD_FILE: MSMg01no327_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:09 2005
         (338 letters)



>mm_chr4_6826297_6827034
          Length = 738

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacaatactttgggagagctctcttggagaattcagcttactgtttaacagtttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacaatactttgggagagctctcttggagaattcagcttactgtttaacagtttctga 260

                                                                       
Query: 61  ctaattttattaacctgtacatctgagaggatcaaccccctctgggtttaattagaagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaattttattaacctgtacatctgagaggatcaaccccctctgggtttaattagaagga 320

                                                                       
Query: 121 aattcaatttggatctaaatgtcaacagtggttactaattatggcaacgctcgggacagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattcaatttggatctaaatgtcaacagtggttactaattatggcaacgctcgggacagg 380

                                                                       
Query: 181 acagcctggctgcaatcaggcaggttcctagtaacatttacgccttctttctgagttccg 240
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 381 atagcctggctgcaatcaggcaggttcctagtaacattaacgccttctttctgagttcca 440

                                                                       
Query: 241 agagagtttggatgttttaaaataaatacaattcagcatgggacactgctaatatcatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagagtttggatgttttaaaataaatacaattcagcatgggacactgctaatatcatga 500

                                                 
Query: 301 gcccctactgctaggtgcagacatgcagaagtggatgc 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcccctactgctaggtgcagacatgcagaagtggatgc 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)