Query= MSMg01no328_c01.b1 MSMg01no328_c01.b1 CHROMAT_FILE:
MSMg01no328_c01.b1 PHD_FILE: MSMg01no328_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:11 2005
(456 letters)
>mm_chr18_42565324_42566176
Length = 853
Score = 758 bits (392), Expect = 0.0
Identities = 436/456 (95%), Gaps = 10/456 (2%)
Strand = Plus / Plus
Query: 8 caacatctttacgatactaaaatgtgcaggtac-------atttatttaaagcccaacag 60
||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 201 caacatcttgaagatactaaaatttgcaggtactcacatcatttatttaaagcccaacag 260
Query: 61 tatttacatgactctacacatatcatcctttgtaccttacattatctctagattacatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttacatgactctacacatatcatcctttgtaccttacattatctctagattacatag 320
Query: 121 aatccatagtacagtataaataccatgtgtggtgattgttttagctcattaatagtttgt 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aatccatagtacagtataaataccatgtgtggtgactgttttagctcattaatagtttgt 380
Query: 181 caaagtaggggttttgattaagtttagctgattcatgaaaggatatgagacattggttca 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagtaggggttttggttaagtttagctgattcatgaaaggatatgagacattggttca 440
Query: 241 aaaacagtaaagtggcaggttttagctatttctggaggaataaagtaaacagtgactggt 300
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 441 aaaacagtaaagtggcaggttttagctatttctggagcaa---agtaaacagtgactggt 497
Query: 301 tctttttattttaaacagcttgaatatttttgaaatagtgagaattctctagacaatgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tctttttattttaaacagcttgaatatttttgaaatagtgagaattctctagacaatgag 557
Query: 361 acaaagtcatgctcaccgcctgtctgagttagggctttactgctgtgaacagacaccatg 420
||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acaaagtcatgcttattgtctgtctgagttagggctttactgctgtgaacagacaccatg 617
Query: 421 accaaagcaactcttacaaggataacatttaattgg 456
||||||||||||||||||||||||||||||||||||
Sbjct: 618 accaaagcaactcttacaaggataacatttaattgg 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 853
Length adjustment: 10
Effective length of query: 446
Effective length of database: 843
Effective search space: 375978
Effective search space used: 375978
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_c01.g1 MSMg01no328_c01.g1 CHROMAT_FILE:
MSMg01no328_c01.g1 PHD_FILE: MSMg01no328_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:11 2005
(471 letters)
>mm_chr4_126199094_126199966
Length = 873
Score = 638 bits (330), Expect = 0.0
Identities = 438/478 (91%), Gaps = 12/478 (2%)
Strand = Plus / Minus
Query: 1 aattcagtgttttctcttttacccgctt-aaaaaacaaaatc-aaaaacaaactccaact 58
||||||| |||||||||||| || |||| ||||||||||| | |||||||||||||||||
Sbjct: 673 aattcagggttttctcttttgcctgcttaaaaaaacaaaa-caaaaaacaaactccaact 615
Query: 59 tcagttttcctggagtctgtggtatttccaagctcctaccacaaactctcctgtcttgct 118
||||||||||||| ||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 614 tcagttttcctggtgtctgtggtattttcgagctcctaccacaaattctcctgtcttgct 555
Query: 119 gagtaacactgctagtaagaacatcaccaagtcactggcttccacaccttataaaaggat 178
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 554 gagtaacactgctaataagaatatcaccacgtcactggcttccacaccttataaaaggat 495
Query: 179 gacttttagcttcgagattttaaatttactagagacagcctatatttgagtatgtatgtc 238
|| ||||||||| |||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct: 494 gatttttagctttgagattttaaatgtactagagacaacatatatttgagtatgtatgtc 435
Query: 239 agtcatgccacacaaagaaaagcattaactattttcaaagtgttccgttctgagactgcc 298
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 434 agtcatgccacacaaagaaaagcattaactattttcaaagtgttctgttccgagactgcc 375
Query: 299 cacaaccgcttctccttctgttcgtcaggtgattttgcaataggttgactaacg-----c 353
|||| | ||||||||||||||| |||||||| ||||||||||||||||| || |
Sbjct: 374 cacagctgcttctccttctgtttgtcaggtggttttgcaataggttgac---cgatgcac 318
Query: 354 atatatgtaaaaacctgaaaatctggctcatgcaagcattttcaattaacagcgagcccg 413
|||||||||||||||||||||| |||| |||| |||||||||||||||||||| || ||
Sbjct: 317 atatatgtaaaaacctgaaaatttggc-catgtaagcattttcaattaacagcaaggcca 259
Query: 414 tggaagggtatttagaattattttgttgatcgtctagtgggctctgatgctgtgggag 471
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 258 tggaagggtatttagaattgttttgttgatcgtctagtggactctgatgctgtgggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 873
Length adjustment: 10
Effective length of query: 461
Effective length of database: 863
Effective search space: 397843
Effective search space used: 397843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
