Query= MSMg01no328_i16.b1 MSMg01no328_i16.b1 CHROMAT_FILE:
MSMg01no328_i16.b1 PHD_FILE: MSMg01no328_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:43 2005
(603 letters)
>mm_chr4_97119249_97120251
Length = 1003
Score = 721 bits (373), Expect = 0.0
Identities = 397/407 (97%), Gaps = 5/407 (1%)
Strand = Plus / Minus
Query: 5 gaattcattaatgttactacaccacggtagatgctatttcgagctagaatcatttagttg 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcattaatgctagtacaccacggtagatgctatttcgagctagaatcatttagttg 345
Query: 65 ttaaatctgccgacttcttcctatcactgtaagttattcttgttccaactccactgtact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ttaaatctgccgacttcttcctatcactgtaagttattcttgttccaactccactgtact 285
Query: 125 caatagtgtgatacaggtcagaatttaagtacatctcctagtgtctttactctcttttga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 caatagtgtgatacaggtcagaatttaagtacatctcctagtgtctttactctcttttga 225
Query: 185 ggcattggggaaggtctaaaggctcagcatgtggatctattctatagacatgtgccatgc 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 224 ggcattggggaaggtctaaaggctcagcatgtggatctattctatagacacgtgccatgc 165
Query: 245 tggtccagctgatgatgggtttcatttgggcactagcatggcgttctaaggctgtgttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 tggtccagctgatgatgggtttcatttgggcactagcatggcgttctaaggctgtgttct 105
Query: 305 aaatgcacttacttctttttctctcctttaaatagaacatctccctgtgctttgctgcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 aaatgcacttacttctttttctctcctttaaatagaacatctccctgtgctttgctgcca 45
Query: 365 ttgaata--cccgccttggtgttgctggaaatgtaaaaatgtgtttt 409
||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 44 ttgaatagt---ggtttggtgttgctggaaatgtaaaaatgtgtttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_i16.g1 MSMg01no328_i16.g1 CHROMAT_FILE:
MSMg01no328_i16.g1 PHD_FILE: MSMg01no328_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:43 2005
(619 letters)
>mm_chr4_96964048_96965065
Length = 1018
Score = 1151 bits (595), Expect = 0.0
Identities = 613/619 (99%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 acatataaaatacattgtctttcaattcagaaaatctctgcggaggtcaattctactgtt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acatataaaatacattgtctttcaattcagaaaatctctgcagaggtcaattctactgtt 260
Query: 61 caggttatgcgtgactgtggatttgttcccagtatctccaaatgtgtttcctcctttttg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 caggttatgcgtgactgtggatttgttcccagtatctccaaatctgtttcctcctttttg 320
Query: 121 aataggaatatcttggctttaaaaaagaagaagtagaagttgtaaaagaaataagataat 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aataggaatatcttggctttaaaaa-gaagaagtagaagttgtaaaagaaataagataat 379
Query: 181 aaaaataatatagagtcagactatagagatggctcggtggttaagagtgccttcagctct 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 380 aaaaataatatagagtcagactatagagatggctcgatggttaagagtgccttcagctct 439
Query: 241 tccagaggtcttgagttctattcccaatactcatgccgggtggctcacaacttactgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tccagaggtcttgagttctattcccaatactcatgccgggtggctcacaacttactgtaa 499
Query: 301 ctccagttctagggtatatgatgcctcttgcctgaatgggatcctgtgtcctcatgctct 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctccagttctagggtatatgatgactcttgcctgaatgggatcctgtgtcctcatgctct 559
Query: 361 tacttacagagacacatatacatgcatgtacagaattatacataaaacatatcttaagtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacttacagagacacatatacatgcatgtacagaattatacataaaacatatcttaagtt 619
Query: 421 gtttattaactcaatctctggaaaaatagaaaaactgtgtgttcatgaggttggcatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtttattaactcaatctctggaaaaatagaaaaactgtgtgttcatgaggttggcatcca 679
Query: 481 ttatcttcaatgagcaaattcctggttaagaataatatgtttcaagttctaccatgtagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttatcttcaatgagcaaattcctggttaagaataatatgtttcaagttctaccatgtagg 739
Query: 541 aaaatatactttcgacaattgagaatctatatgcaaaatgttcttaccaatgcctgcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aaaatatactttcgacaattgagaatctatatgcaaaatgttcttaccaatgcctgcaaa 799
Query: 601 tgatataaaactaaaaagt 619
||||||||| |||||||||
Sbjct: 800 tgatataaacctaaaaagt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
