Query= MSMg01no328_p08.b1 MSMg01no328_p08.b1 CHROMAT_FILE:
MSMg01no328_p08.b1 PHD_FILE: MSMg01no328_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:15 2005
(508 letters)
>mm_chr4_148545685_148546593
Length = 909
Score = 843 bits (436), Expect = 0.0
Identities = 496/536 (92%), Gaps = 32/536 (5%)
Strand = Plus / Plus
Query: 5 gaattccagtggctggccccaggctagggagaaagcagttttgaaacacacacacacaca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gaattccagtggctgggggcaggctagggagaaagcagttttgaaacacacacacacaca 233
Query: 65 cacacacac------------------------------tcaaacagtctcagacacaca 94
||||||||| |||||||||||||||||||||
Sbjct: 234 cacacacacacacacacacacacacacacacacacacactcaaacagtctcagacacaca 293
Query: 95 acagatacagacacacccacacacccacagaaggagtgctcacaaacaagaggtgctcag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acagatacagacacacccacacacccacagaaggagtgctcacaaacaagaggtgctcag 353
Query: 155 ggttctgcgggaacaagtcagttccagagggagactgggaaaccttcccatccaaataaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ggttctgcgggaacaagtcagttccagagggagactgggaaaccttcccatccaaataaa 413
Query: 215 aagtagactgttaagaaaaaaaacagggctggagagatggctcagcggataagagcactg 274
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aaatagactgttaagaaaaaaaacagggctggagagatggctcagcggataagagcactg 473
Query: 275 agttcaagtcccagcaaccacatggtggctcacaaccatctgtaatgggatccgatgccc 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agttcaagtcccagcaaccacatggtggctcacaaccatctgtaatgggatccgatgccc 533
Query: 335 tcttctggtgtgtctgaatacagcgacagtgtacttacatataccaacaaataaatcttt 394
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 534 tcttctggtgtgtctgaatacagcgacagtgtacttacatataataataaataaatcttt 593
Query: 395 aaaaaagaaaagaaaaaaaaaat--cagaaaactggctggaacatagcgcagtgtttgct 452
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 594 aaaaaagaaaagaaaaaaaaaatatcagaaaactggctggaacatagcgcagtgtttgct 653
Query: 453 gagcaatcctgaggctgaggcccaggtgggcgtggtggcttttgtaatccctgtgc 508
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 654 gagcaatcctgaggctgaggcccaggtgggcgtggtggcttttgtaattcctgtgc 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 909
Length adjustment: 10
Effective length of query: 498
Effective length of database: 899
Effective search space: 447702
Effective search space used: 447702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no328_p08.g1 MSMg01no328_p08.g1 CHROMAT_FILE:
MSMg01no328_p08.g1 PHD_FILE: MSMg01no328_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:15 2005
(424 letters)
>mm_chr4_148730474_148731297
Length = 824
Score = 789 bits (408), Expect = 0.0
Identities = 420/424 (99%)
Strand = Plus / Minus
Query: 1 ctacttaacctgaaaatggaaatgcaatgatcaaatgtataccttctaaaaagtaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctacttaacctgaaaatggaaatgcaatgatcaaatgtataccttctaaaaagtaattat 746
Query: 61 ttagtgctcagcctttcttagtgcatacggatagccccagcacttaggagactgagagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttagtgctcagcctttcttagtgcatacggatagccccagcacttaggagactgagagaa 686
Query: 121 aagaatcatgagttcaaggtcggcgtgggctacacagcaagaccctgccttccaagacca 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagaatcatgagttcaaggtcagcgtgggctacacagcaagaccctgccttccaagacca 626
Query: 181 agaaaagaaagaagtagatgccctttaatgatttatttcctcactttagagtagaattcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaaaagaaagaagtagatgccctttaatgatttatttcctcactttagagtagaattcg 566
Query: 241 gcaatacttgaataggaattgtaatacagttgcagaggtgaaggaggcacacggaggaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaatacttgaataggaattgtaatacagttgcagaggtgaaggaggcacacggaggaca 506
Query: 301 gttattagagcagcagtggcccggggcgaagtgacccagggcttaccaccttatgagttg 360
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 505 gttattagagcagcagtggcccggggcgaagtgacccagggcttagtagcttatgagttg 446
Query: 361 aggactccttccctgtgttgcctaggctagcttcaagttcttagactcctgccttatctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggactccttccctgtgttgcctaggctagcttcaagttcttagactcctgccttatctc 386
Query: 421 ctaa 424
||||
Sbjct: 385 ctaa 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
