BAC Information

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BAC

Clone NameMSMg01-329I09
Chromosome4 (Build37)
Map Location 12,832,334 - 12,832,657
singlet/doubletsinglet
Overlap genenone
Upstream genePpm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329I09.T7 (MSMg01no329_i09.b1)MSMg01-329I09.TJ (MSMg01no329_i09.g1)
ACCAG446336AG446337
length760739
length of high quality
(start - end)
328 (47 - 374)411 (75 - 485)
definitionCHROMAT_FILE: MSMg01no329_i09.b1 PHD_FILE: MSMg01no329_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005CHROMAT_FILE: MSMg01no329_i09.g1 PHD_FILE: MSMg01no329_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATGACATTATATCCATGTTCTTAATGAGGATTGTATATGTGTG
TTGCTTGGAGGAGAGAGGAAATAGTGAAGTCCCAACATATATGCTTCCTT
GTTCAAATAAAATGGACACCATGTTGTGACAAAATTTCTGGAATAGAAGG
AATATATTTTGTGGCAAATGATTTTATTTTCTAATCTTGCTGAACTTCCA
AATTCTTCTTAAAGCTTGAACTATGAATAACTCCACCCCAAAGATTTCTT
GATTGTGTGTGACCTATGCTCCCATTTAAGTTTCTTTAATCTTTTAAAAA
TGTTTTATTCTGAAAGAGTTATGATTGTGCACTAATATGCATATTGTATA
AATAAATACTGTTAGCTTTACACCCCCTTGATAAAAGATGCGAGTCGTTT
TTAACTCCATATTCACATATAGAAAATCCCCTTGTTTCTAATTCCCTTTT
GCTCACCATTACCCCTAAGTAACTGTTATGTAAGTATGTCAGTGTCTTAC
TTGTGTTATACACCCTTTCTTATGGGCCTTATTTTGAGTGTTGGTGGATT
TATTATTCAATTTATTTCTGTATTGTTTCGTTTTCTTGGGGCGTGGTCTT
GTGGTGGCGGCTTGGCTCCCTATGTCCTCCGGTGCGGCTGCGGTTATCTT
AATCTTTTTCTTTCTAATTCTTCATTCTCCCTCTTCCAGGACGTGGGTCT
CATCTGCTTT
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGCCCACAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACACACAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGTATGGACCTGGAGGGCATCATCCTGAGTG
AGTCTAAACATTCTCTAAGAAACTCACACAATATGTATTTCACTGATAAT
CGGATATTAGGCTCGAACCCAAGGATCCCCTGTATATTACATATAATTTG
GCTAAACCACGTGAACAATCAAGGAATACTGGGTAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_i09.b1 MSMg01no329_i09.b1 CHROMAT_FILE:
MSMg01no329_i09.b1 PHD_FILE: MSMg01no329_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:00 2005
         (328 letters)



>mm_chr4_12832130_12832857
          Length = 728

 Score =  588 bits (304), Expect = e-172
 Identities = 319/324 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgacattatatccatgttcttaatgaggattgtatatgtgtgttgcttggag 64
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcaatgacattaaataaatgttcttaatgaggattgtatatgtgtgttgcttggag 469

                                                                       
Query: 65  gagagaggaaatagtgaagtcccaacatatatgcttccttgttcaaataaaatggacacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gagagaggaaatagtgaagtcccaacatatatgcttccttgttcaaataaaatggacacc 409

                                                                       
Query: 125 atgttgtgacaaaatttctggaatagaaggaatatattttgtggcaaatgattttatttt 184
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgttgtgacaaaatttttggaatagaaggaatatattttgtggcaaatgattttatttt 349

                                                                       
Query: 185 ctaatcttgctgaacttccaaattcttcttaaagcttgaactatgaataactccacccca 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctaatcttgctgaatttccaaattcttcttaaagcttgaactatgaataactccacccca 289

                                                                       
Query: 245 aagatttcttgattgtgtgtgacctatgctcccatttaagtttctttaatcttttaaaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagatttcttgattgtgtgtgacctatgctcccatttaagtttctttaatcttttaaaaa 229

                                   
Query: 305 tgttttattctgaaagagttatga 328
           ||||||||||||||||||||||||
Sbjct: 228 tgttttattctgaaagagttatga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)