BAC Information

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BAC

Clone NameMSMg01-329L22
Chromosome4 (Build37)
Map Location 88,327,162 - 88,327,532
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275
Downstream geneIfna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329L22.T7 (MSMg01no329_l22.b1)MSMg01-329L22.TJ (MSMg01no329_l22.g1)
ACCAG446488AG446489
length763832
length of high quality
(start - end)		377 (46 - 422)215 (74 - 288)
definitionCHROMAT_FILE: MSMg01no329_l22.b1 PHD_FILE: MSMg01no329_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:19 2005CHROMAT_FILE: MSMg01no329_l22.g1 PHD_FILE: MSMg01no329_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGATTTTTCTTCCATGCCCAATGTGTCTAGATGTGGCATAGAT
GTCAGTTACTTGTGATAGATAACAAGGGTTCAGTCCCTTAACTGTCTGTA
CTTTCCCATTTACACTTTCTTCTTTCCTGAGGTGTTGGTTTCATGTTCAA
TGTCTCAAATTCTTTTCTCTACACTCCTAGAAAGAAATCCTTGATGCTGG
TTTAAGGTACTGAGCCAAAAATATGATGTCGATGGAAATGAAAGCTGAAA
AAGGAACTGATGTGACATCTAAAGGACAAAGTAGTAGCTTATGTTAGGTA
CTAAGATGATAAGGGCAAGCTTTATGGCCATTAATAAGATAATGTTATGA
AAGTGACTGTACTTTCTGGTCCCCACCGCAATCCACATATCACTTTCAGT
AAAATTAATCTCATAAGTGTCATACTTAAAATACATTGGAGTCATGAATT
TAACAAAGAATGACTGTAGTGTTGTTGCCAAATTGTTATAATACTTGACT
TGATANTAGAGTTTATCCTTACTATATGGTTTCTGCGCCAGTTATTATTT
ACTATTTAACCGTTTTGTTCCATCATGCTTTTGCCTTGACATATTTCCCT
TCTGCTTTTTACCCATTTTTTTTTTTTTTCGCTCCTCCCATTTTTCTTTC
ATACTGTCTCCACCTCTTCCCTTCCCCTATTCTTTTTCCCCTTTTTAGTT
TTTCTTTTCTTTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGATAGCATATGCTGGCAAGGATGTGGAGAAAGAGGAACA
CTCCCCCATTGTTGGTGGGATTGCAACCACTCTGGNAATCAGTCTGGCTT
CNNNCCAAANNATTGGACATAGTACTACCAGAGGATCCTGAACNNNNCTC
TCCTGGGTATATATCCAGAAAAGGTCCCAACCAGNTAAAAAGACCCTTTC
TCCCCTATGGTCATAGGGGCCCCCCCCCCTTTTANCCCAAANTCGCNTAA
TCAACCCCTAAGCAGTNTNNNTNTTTNNNNTGGGTTTNNNNAAATNGGGG
ATATTTTTTCCCNNTGGGTTCGCCNGTTTCTCCTTTTAAAAACAAACTCT
TTTTTTCCNNCTCTCTCTCTTCCTTTTCCCTTTTAGTCCCTCCCTGTTGT
TACCTTCAGAGGGAAGGAATTCTCCTCTAGCNTTTNTNNTTTTTTAATTG
GATGTGCCCCCCCAAGCTTTTTTTNNAAGGGGNNNNNCTNNNNTNNTAAG
TTNCTCCTCCTTTTTTAGCTCTCTTNTTCCCCTTNTGTCCTTTCTTTCCT
TNNTAGCTCCTTNAAGCCTAGNCNNCNTNNNNNNNNNNTNNNNNCNTNNG
GGTGGGGGAGCTTGAACCGCGCTTTTTGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_l22.b1 MSMg01no329_l22.b1 CHROMAT_FILE:
MSMg01no329_l22.b1 PHD_FILE: MSMg01no329_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:19 2005
         (377 letters)



>mm_chr4_88326958_88327734
          Length = 777

 Score =  503 bits (260), Expect = e-147
 Identities = 345/376 (91%), Gaps = 10/376 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgatttttcttccatgcccaatgtgtctagatgtggcatagatg-tcagtta 63
           ||||||||||||| |||||||||||||| |||||||| |  ||||||||||| |||||| 
Sbjct: 205 gaattcagtgattattcttccatgcccattgtgtcta-a--tggcatagatgttcagttg 261

                                                                       
Query: 64  cttgtgatagataacaaggg--ttcagtcccttaactgtctgtactttcccatttacact 121
           ||||||| ||| | ||||||  || ||||||| |||||||||||||||||||||||||||
Sbjct: 262 cttgtgacagacagcaagggtttttagtccctcaactgtctgtactttcccatttacact 321

                                                                       
Query: 122 ttcttctttcctgaggtgttggtttcatgttcaatgtctcaaattcttttctctacactc 181
           |||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 322 ttcttctttcctgaggtgttggtttcatgttcgatgtctccaattctgttctctacactc 381

                                                                       
Query: 182 ctagaaagaaatccttgatgctggtttaaggtactgagccaaaaatatgatgtcgatgga 241
           ||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||
Sbjct: 382 ctagaaagaaaaccttgatgctggtttgtggcactgagccaaaaatatgatgtcgatgga 441

                                                                       
Query: 242 aatgaaagctgaaaaaggaactgatgtgacatctaaaggacaaagtagtagcttatgtta 301
           |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 442 aatgaaagctgaaaaaggaactgatgtgtcatctaaaagacaaagtagtagcttatgtta 501

                                                                       
Query: 302 ggtactaagatgataagggcaagctttatggccattaataagataatgttatgaaagtga 361
           |||||||||| |||||||||||||||| ||||||||| ||||||||||| ||||||||||
Sbjct: 502 ggtactaagacgataagggcaagctttgtggccattagtaagataatgtgatgaaagtga 561

                           
Query: 362 ctgta--ctttctggt 375
           ||  |  |||||||||
Sbjct: 562 ct--aagctttctggt 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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