Query= MSMg01no330_m03.b1 MSMg01no330_m03.b1 CHROMAT_FILE:
MSMg01no330_m03.b1 PHD_FILE: MSMg01no330_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:32 2005
(321 letters)
>mm_chr4_39456805_39457524
Length = 720
Score = 569 bits (294), Expect = e-166
Identities = 312/318 (98%), Gaps = 1/318 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcttactattaaaaatacgtgtgtaatatttttattgtttcaggattttgtgt 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ggaattctcttacta-taaaaatacgtgtgtaatatttttattgtttcaggattttgtgt 462
Query: 64 ttataaaccaatctatcccgaaaactgatcaattctttgttcagagatttgggatgccca 123
|||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||
Sbjct: 461 ttataaaccaatctatccagaaaactgatcaattctttgctcagagatttaggatgccca 402
Query: 124 tgtctggagaaagtatcaccttgtcctgctttgttttagaggcaagaagtagcctcaggt 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 401 tgtctggagaaagtatcaccttgtcctgctttgttttagaagcaagaagtagcctcaggt 342
Query: 184 ccaggcaatagattaataaacttcaggcacacagctcagaacataaattaaaaatacttt 243
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccaggcaatagatgaataaacttcaggcacacagctcagaacataaattaaaaatacttt 282
Query: 244 gaacttctaaaggttaaaccacatggtttttgttttcatttttgttaccccccattcctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gaacttctaaaggttaaaccacatggtttttgttttcatttttgttaccccccattcctt 222
Query: 304 tcattacaatagctaaca 321
||||||||||||||||||
Sbjct: 221 tcattacaatagctaaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space: 221832
Effective search space used: 221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no330_m03.g1 MSMg01no330_m03.g1 CHROMAT_FILE:
MSMg01no330_m03.g1 PHD_FILE: MSMg01no330_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:32 2005
(252 letters)
>mm_chr4_39292629_39293280
Length = 652
Score = 464 bits (240), Expect = e-135
Identities = 246/248 (99%)
Strand = Plus / Plus
Query: 4 cttatattcagaaggaaaaagaactgagcagattcttgacagtagtctcatattcaaacc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cttatattcagaaggaaaaagaactgagcagattcttgacagtagtctcatattcaaacc 263
Query: 64 tgtcaaacgttgtttgtgctagatctcaaatactgtcttttcagacataataacaaagtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcaaacgttgtttgtgctagatctcaaatactgtcttttcagacataataacaaagtg 323
Query: 124 aatgtcccatcataatgtgtgtggaagcacagttatggtcaaaggctcccaattgtttcc 183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 aatgtcccatcataatgtgtgtggaagcacagttatggtcaaaggcttccaattgtttcc 383
Query: 184 aaaatattacaagtatttgcttgctaatatgagcttattatacatagatttatttaatat 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaatattacaagtatttgcttgctaatatgagcttattatacatagatttatttaatac 443
Query: 244 tttctgtt 251
||||||||
Sbjct: 444 tttctgtt 451
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
