Query= MSMg01no331_b24.b1 MSMg01no331_b24.b1 CHROMAT_FILE:
MSMg01no331_b24.b1 PHD_FILE: MSMg01no331_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:59 2005
(134 letters)
>mm_chr4_116477660_116478193
Length = 534
Score = 188 bits (97), Expect = 1e-52
Identities = 100/101 (99%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 1 tgggctgccagctgcccgctgcttcccattctcccgctcactgcaacagcgcaagaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggctgccagctgcccgctgcttcccattctcccgctcactgcaacagcgcaagaaggt 260
Query: 61 attgcttcactagcatataagttccaccagaacacgggggg 101
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 attgcttcactagcatataagttccaccagaaca-gggggg 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space: 66276
Effective search space used: 66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no331_b24.g1 MSMg01no331_b24.g1 CHROMAT_FILE:
MSMg01no331_b24.g1 PHD_FILE: MSMg01no331_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:59 2005
(601 letters)
>mm_chr4_116572003_116573003
Length = 1001
Score = 1100 bits (569), Expect = 0.0
Identities = 593/601 (98%)
Strand = Plus / Minus
Query: 1 cccagagtaagatgtttggggaggttagaggttataacctgcaaggccttgcagaccata 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 611 cccagagtaagatgtttggggaggttagaggttataacctgcagggccttgcagaccata 552
Query: 61 tttgatttttaaacaaagagagaattgaaagcaatcagactcaagtaatgctgaccttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttgatttttaaacaaagagagaattgaaagcaatcagactcaagtaatgctgaccttca 492
Query: 121 acaggaagctattaggaaagtttacttggataatgacatgtccacatttatcttttcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acaggaagctattaggaaagtttacttggataatgacatgtccacatttatcttttcaga 432
Query: 181 caaatcaactaacaactgacaaataagagacagccaagaacggcttctggaggagccttt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 431 caaatcaactaacaactgacaaataagagacagccaagaatggcttctggaggagccctt 372
Query: 241 caggcaaatgcagtaatcccagtaagagattataacagtctggctaagggctgaggggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 caggcaaatgcagtaatcccagtaagagattataacagtctggctaagggctgaggggca 312
Query: 301 aaaggtaagtttcagactggatcagaaaattaggaagcagtatcaccaccacttaatgat 360
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 311 aaaggtaagtttcagactggatcagaaaattaggaagcagtatcaccaggacttaatgat 252
Query: 361 aaactaggcatataaagagtaaggaaaataaaagattcaaaaataatctaagggactgaa 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaactaggcatataatgagtaaggaaaataaaagattcaaaaataatctaagggactgaa 192
Query: 421 gagatgctcaacagttaaatgcactggctgctcttccagaagacccgtgtccacagcacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gagatgctcaacagttaaatgcactggctgctcttccagaagacccgtgtccacagcacc 132
Query: 481 cacaactgtcgtaactccggtgccagagaatacaatgtcctctttgggcctccatgggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 cacaactgtcgtaactccggtgccagagaatacaatgtcctctttgggcctccatgggca 72
Query: 541 ccagatatacgtgtggtacacaacaaacaagcaaaataccatttgagtttaaagcgacag 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 71 ccagatatacgtgtggtacacaacaagcaagcaaaataccatttgagtttaaagccacag 12
Query: 601 g 601
|
Sbjct: 11 g 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
