Query= MSMg01no331_e18.b1 MSMg01no331_e18.b1 CHROMAT_FILE:
MSMg01no331_e18.b1 PHD_FILE: MSMg01no331_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
(695 letters)
>mm_chr4_27048520_27049614
Length = 1095
Score = 1185 bits (613), Expect = 0.0
Identities = 677/703 (96%), Gaps = 13/703 (1%)
Strand = Plus / Minus
Query: 6 aattctacttctggcctgggaggcagcaagaagagtaacaatgagcctggcttgtgcaac 65
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971 aattctacttctgggttgggaggcagcaagaagagtaacaatgagcctggcttgtgcaac 912
Query: 66 tgaaaccttcaagcccactcctagtgacatacttcttccaacaaaaccaacttgtctcca 125
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 911 tgaaacctttaagcccactcctagtgacatacttcttccaacaaaaccaacttctctcca 852
Query: 126 acgagtgcacaccaactaataatgattttctctgtgagcttattttggacaattttcatc 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 acgagtgcacaccaactaataatgattttctctgtgagcttattttggacaattttcatt 792
Query: 186 caaac--------catatatatatgtatatatatatatatatat-t-atttgatttttct 235
||||| ||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct: 791 caaaccatatatacatatatatatatatatatatatatatatatataatttgatttttct 732
Query: 236 ttatattttaattaattaaagtgagtcttcctagaaaatgttacattcttattcttgttt 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 ttatattttaattaattaaagtgagtcttcctagaaaatgttacattcttattcttgttt 672
Query: 296 cacaccagaaatataatatatatgctttaagcacagttggatctcttgtgattgttagct 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 cacaccagaaatataatatatatgctttaagcacagttggatctcttgtgattgttagct 612
Query: 356 aaaatcatgtggttcccactttctattactttgaaatagtattagaggcatgcctgaagg 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaaatcatgtggttcccactttctattactttgaaatagtattagaggcatgcctgaagg 552
Query: 416 taaagagataggtttttaaggcctaaacttaaagtcgattgctcaccaagtttctcttca 475
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 551 taaagagataggtttttaaggcctaaacttaaagtcaattgctcaacaagtttctcttct 492
Query: 476 cctttgggctccttggctttctttctttc-tttttttcaattaattta-tttttttatac 533
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 491 cctttgggctccttggctttctttctttcttttttttcaattaatttattttttttatac 432
Query: 534 ttcatattttact-accccacccacatccatcctttgactgttccaaatcccataccacc 592
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttcatattttactccccccccccacatccatcctttgactgttccaaatcccataccacc 372
Query: 593 tccccacccctctgtctccaagtggctgtcccaacccaccaacccacaggacctctaaac 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tccccacccctctgtctccaagtggctgtcccaacccaccaacccacaggacctctaaac 312
Query: 653 tccctggggtctccagtctcttgagggttaggtgcatcttctc 695
||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 311 tccctggggtctccagtctcttgagggttaggtacatcatctc 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space: 743225
Effective search space used: 743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_e18.g1 MSMg01no331_e18.g1 CHROMAT_FILE:
MSMg01no331_e18.g1 PHD_FILE: MSMg01no331_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
(626 letters)
>mm_chr4_26900740_26901757
Length = 1018
Score = 1009 bits (522), Expect = 0.0
Identities = 598/628 (95%), Gaps = 12/628 (1%)
Strand = Plus / Plus
Query: 1 tagtttggttttatttttgtttgcttgtgtgtttgttttctaaacatagagaggaaagga 60
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tagtttggttttatttttatttgcttgtgtgtttgttttctaaacacagagaggaaagga 260
Query: 61 gtattttcatggataagttgcttagtttggactctctctctctctctcaggcgactttgc 120
||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct: 261 gtattttcatggataagctgcttagtttggactctctcgctctc----aggtgactttgc 316
Query: 121 ttgcatttttttcaggagttttcctctagcaatcctatattgtcagcaagtccagatatt 180
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ttgcattttgt-caggagttttcctctagcaatcctatattgtcagcaagtccagatatt 375
Query: 181 gtctttatgtgttgacatatttttatgtattatttattcacgtatgatcatttcatttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtctttatgtgttgacatatttttatgtattatttattcacgtatgatcatttcatttag 435
Query: 241 taacttcagccattttacatgttagtgtgagagcctagtatgtgagcttgggtgaatggg 300
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 436 taacttcatccattttacatgttagtgtgagagcctagtatgtgggcttgggtgaatggg 495
Query: 301 gaggtagggaggcaagtagttgtaagacagaaaactatgcctcccct--tttcaattaaa 358
|||||||| ||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 496 gaggtagg-aggcaagtagttgtaagacagaaaactatgcct----tgttttcaattaaa 550
Query: 359 agaagtgttgaaagtagaaggaaaggcagtagtagagaggaagaggcagatggaaaagat 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 551 agaagtgttgaaagtagaaggaaaggcagtagtaaagaggaagaggcagatggaaaagat 610
Query: 419 gcagaaaatcatattgcagttatcaactttgtttatattttgtatgtcctctaagtccac 478
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 611 gcagaaaatcatattgcagttatcaactttggttatattttgtatgttctctaagtccac 670
Query: 479 ctcataatcacacacgtctatatttgtagttagaaatattaaggaatttactccctcctt 538
|||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 671 ctcataatcacacatgtctatatttgtagttagaaatattaaagaatttacttgctcctt 730
Query: 539 tttaaaaaaggatttcatgtcaattagagattaaagagaaaataaaatgttaaacaatgc 598
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 731 tttaaaaaaggatttcatgtcaattagagcttaaagagaaaatgaaatgttaaacaatgc 790
Query: 599 ctagtaagaattatattatagctgggaa 626
|||||||||||||||||||||| |||||
Sbjct: 791 ctagtaagaattatattatagccgggaa 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1018
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1008
Effective search space: 620928
Effective search space used: 620928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
