BAC Information

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BAC

Clone NameMSMg01-331F11
Chromosome4 (Build37)
Map Location 82,943,691 - 82,944,049
singlet/doubletsinglet
Overlap gene1810054D07Rik
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331F11.T7 (MSMg01no331_f11.b1)MSMg01-331F11.TJ (MSMg01no331_f11.g1)
ACCAG447661AG447662
length718720
length of high quality
(start - end)
365 (47 - 411)244 (76 - 319)
definitionCHROMAT_FILE: MSMg01no331_f11.b1 PHD_FILE: MSMg01no331_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:14 2005CHROMAT_FILE: MSMg01no331_f11.g1 PHD_FILE: MSMg01no331_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGCCGCCCTAGAAGCAGAAGGAAATCTTGCTTCGATTCACAG
AGCTCTTCTGTGGGTGTATTCCATTAGGATTGTTACTGCCCGCCCCATCC
TTTTCCCACCCCACTCCCTAATTCGTAGACTCATCCTTTTTCTCCATTCT
TGAGAAACTCACTGTATGTTTTCTTCCTTTCCAGGATATCTTTGAAGATG
CCTTGGAGACCATCTCTAGGTAAGTCATAACATAATAAAAAAAGTGAAGC
CGGGCAGTGGTTGTCCATGCCCTTAATCCCTGCACTCGGCAGAGGCAGGT
GAATCTCTGAGTTCAAGGTCAGCCTGGTCTACATAGGGAGTTCCTGGACA
GAAAGGGCTACATACACAAAGCTTCTCTAGATAAACAAAAACAAAAAAAC
AAACAAAACTGTGGGTCATAGTGAGAAGCTGGTGGTTCTTGTGTATAAAA
TGTCAGTGTTTCATTCTCAGTGTTTTGAGCGCAGTGGCCACTGTCTGGAA
AACATCACAAGTCCATAACGAAAACGTCACGATGTAACTACACTTAGGAT
CTACCAAACATTCTCAACCACGTTTAATTCTTGCATTGTTAAATAAAAGA
ATGCTCTCCAGCAAATTACTTTGCTTATAGTCCATGTTCTAAGCATTTGT
CCATTATCATTACGCGAT
ACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACAAAAAAATTCTCACCTGAGGAATACCGAATGGCT
GAGAAGCACCTGAAAAATTGTTCACCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGACTCCTTTTATTTTTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATACAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCACGNCCATAGCAGTGTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGATACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGTATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTG
CTAAACACATGAAACTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_f11.b1 MSMg01no331_f11.b1 CHROMAT_FILE:
MSMg01no331_f11.b1 PHD_FILE: MSMg01no331_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:14 2005
         (365 letters)



>mm_chr4_82943600_82944363
          Length = 764

 Score =  636 bits (329), Expect = 0.0
 Identities = 353/361 (97%), Gaps = 2/361 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgccgccctagaagcagaaggaaatcttgcttcgattcacagagctcttctg 64
           ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 450 gaattctctgccgcagtagaagcagaaggaaatcgtgcttcgattcacagagctcttctg 391

                                                                       
Query: 65  tgggtgtattccattaggattgttactgcccgccccatccttttcccaccccactcccta 124
           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 390 tgggtgtattccactaggattgttactgcccgccccatcc-tttcccaccccactcccta 332

                                                                       
Query: 125 attcgtagactcatcctttttctccattcttgagaaactcactgtatgttttcttccttt 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 attcgtagactcatcctttttctccattcttgagaaactcactgtatgttttcttctttt 272

                                                                       
Query: 185 ccaggatatctttgaagatgccttggagaccatctctaggtaagtcataacataataaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ccaggatatctttgaagatgccttggagaccatctctaggtaagtcataacataataaaa 212

                                                                       
Query: 245 aaagtgaagccgggcagtggttgtccatgcccttaatccctgcactcggcagaggcaggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 211 aaagtgaagccgggcagtggttgtccatgcccttaatccctgcactc-gcagaggcaggt 153

                                                                       
Query: 305 gaatctctgagttcaaggtcagcctggtctacatagggagttcctggacagaaagggcta 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ggatctctgagttcaaggtcagcctggtctacatagggagttcctggacagaaagggcta 93

            
Query: 365 c 365
           |
Sbjct: 92  c 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)