Query= MSMg01no331_l03.b1 MSMg01no331_l03.b1 CHROMAT_FILE:
MSMg01no331_l03.b1 PHD_FILE: MSMg01no331_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:38 2005
(674 letters)
>mm_chr4_103025045_103026114
Length = 1070
Score = 1222 bits (632), Expect = 0.0
Identities = 660/672 (98%), Gaps = 8/672 (1%)
Strand = Plus / Plus
Query: 5 gaattcttagaatttc-ctt-aatatagttcaaaattaaacctttacttccttcccacct 62
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagaaa--cactttaatatagttcaaaattaaacctttacttccttcccacct 262
Query: 63 caggcccttgagttacacatccaggacaactactgtgaacagttctgaggtagccttcca 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caggcccttgagttacacatccaggacaactactgtgaacagttctgaggtagccttcca 322
Query: 123 cagtgctctgtgtacttaagtgtatgtggaacatatgtacatgagttaaaaatagagttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagtgctctgtgtacttaagtgtatgtggaacatatgtacatgagttaaaaatagagttt 382
Query: 183 aaaaataaatagtgttttgaatgggctaaatgtattttttctcatgcatgtagttgagaa 242
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 aaaaataaatagtgttttgaatgggctaaatgtattttttctcatg----tagttgagaa 438
Query: 243 aattggacagcttgatacacattaagtattttcttcacctttattaaatgtttcctaatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aattggacagcttgatacacattaagtattttcttcacctttattaaatgtttcctaatt 498
Query: 303 gtatcattctgtataaaatttctatagtgaagtttaataacagattatttttaatagaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtatcattctgtataaaatttctatagtgaagtttaataacagattatttttaatagaaa 558
Query: 363 cattaatttatatgcaagatttcccccttaatacatgtttttaatgtcagttggcttatt 422
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cattaatttatatggaagatttcccccttaatacatgtttttaatgtcagttggcttatt 618
Query: 423 gaaaacagggtggcggtcagggcgctgggcttgcgttgctgcagtgaaatattgtttgtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaaaacagggtggcggtcagggcgctgggcttgcgttgctgcagtgaaatattgtttgtg 678
Query: 483 ttccgcttttctcgttgttctgttttgcagtcctggggtcaaagccagagcctagtgctc 542
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 679 ttccgcttttctcgttgttctgttttgcagtcctgggatcaaagccagagcctagtgctc 738
Query: 543 taggcatgttactccactgctgattttaattcccagcttgaggttttattcttttaagta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 taggcatgttactccactgctgattttaattcccagcttgaggttttattcttttaagta 798
Query: 603 gtaaacatatacttctcttttgttacaatggtgatagaaaattagaataattttgacatg 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 799 gtaaacatatacttctcttttgttacaatggtgatagaaaattagaataattttgaaatg 858
Query: 663 tgtagtgacaca 674
||||||||||||
Sbjct: 859 tgtagtgacaca 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1070
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1060
Effective search space: 703840
Effective search space used: 703840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_l03.g1 MSMg01no331_l03.g1 CHROMAT_FILE:
MSMg01no331_l03.g1 PHD_FILE: MSMg01no331_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:38 2005
(638 letters)
>mm_chr4_103201943_103202980
Length = 1038
Score = 1164 bits (602), Expect = 0.0
Identities = 629/638 (98%)
Strand = Plus / Minus
Query: 1 tgcatgtgcctgcatagtttgacctgattctcctcattgctgcctaaatgcatatgctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tgcatgtgcctgcatagtttgacctgattctcctcattgctgcctaaatgcatatgctag 779
Query: 61 atgaggcattccttccatttcagttgatggataagaaggtcaacactcagatgacccctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 atgaggcattccttccatttcagttgatggataagaaggtcaacactcagatgacccctg 719
Query: 121 ataatccacatccctcatgtaataggagaaagaaataagaatttcttgtcataggttttt 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 718 ataatccacatccctcatgtaataggagcaagaaataagaatttcttgtcataggttttt 659
Query: 181 gagatactgtggttatttgttattgcaacaaaactagctaacatgctatccaaaataaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gagatactgtggttatttgttattgcaacaaaactagctaacatgctatccaaaataaac 599
Query: 241 tatatctctgtcataatttatatattttccctttttatagacttaataaattgtcacaat 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tatatctttgtcataatttatatattttccctttttatagacttaataaattgtcacaat 539
Query: 301 taatgatttgctaggtggctcctggataaaataggtaattatttgcgatagtgggaggtt 360
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 538 taacgatttgctaggtggctcctggataaaataggtaattatttgtgatagtgggaggtt 479
Query: 361 cctggatgatggaactcaccagagactttgatggccacctttgacaagccacacttgtgc 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 478 cctggatgatggaacccaccagagactttgatggccacctttgacaagccacacctgtgc 419
Query: 421 agctcagcatcttcctcaccacgaacctctgtgaagttgtaaagatgaggaccacagaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 418 agctcagcatcttcctcaccacgaacctctgtgaagttgtaaagatgaggaccacagata 359
Query: 481 tatgggatgaaagaatatgatatttggaggatgccagaacatagtcttttactactgggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tatgggatgaaagaatatgatatttggaggatgccagaacatagtcttttactactgggt 299
Query: 541 gagtggtcagtgatgaagtccatgaaccaatgattgaatttttgtacagcatattcattt 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 298 gagtggtcagtgatgaagtccatgaaccaatgattgaatttttgtacagtatattcattt 239
Query: 601 gcctgtaatatttattgagtgcttgctacatggtagct 638
|||||||||||||||||||||||| |||||||||||||
Sbjct: 238 gcctgtaatatttattgagtgctttctacatggtagct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
