BAC Information

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BAC

Clone NameMSMg01-331L17
Chromosome4 (Build37)
Map Location 147,863,234 - 147,863,600
singlet/doubletsinglet
Overlap geneFrap1
Upstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1
Downstream geneAngptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b, LOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331L17.T7 (MSMg01no331_l17.b1)MSMg01-331L17.TJ (MSMg01no331_l17.g1)
ACCAG447954AG447955
length743743
length of high quality
(start - end)
372 (39 - 410)59 (246 - 304)
definitionCHROMAT_FILE: MSMg01no331_l17.b1 PHD_FILE: MSMg01no331_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:40 2005CHROMAT_FILE: MSMg01no331_l17.g1 PHD_FILE: MSMg01no331_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTT
ACTATTTCCCCGAATGCCCAGCTCACTTCTGTACTGCAGTGGCCCTTAGA
CTTCATTGAAGGCACACGCTCTGAATGTGACAGACCTGGCCACATTGGTT
CTGGAGAGTCCAGCACCAGCAGGTGGCCTTTCCCACACTGTGCTATGTTC
TTGGGGCCACCACTTTTGCTTTATGTATTTTAATGAAACATCACTGCTTT
GCTTATGTTCTGGGAGAGCTTTATCATAGTAGGTATGAATTTACTAATCA
GAGCAGAATGGTGGTGACATAGGTTGCCATGGTTGCGCCTCACAACTGGC
CCTTAAATTTGATGGTTTCTCATTGTCACCTATGGTATCACAGGCCTGGG
GAGCTGCCACAACCCCCTCCAAGGACGACTGGCTGGAGTGTCTGAGACGC
TTGAGTCTGGAGCTTCTGAAGGACTCCTCATCGCCCTCCCTGCGCTCATG
CTGGGCCCTGGCGCAGGCCTACAACCCCATGGCCAGGTACGGTACGGTAC
GCAGAGCTCCGACCTGGGTCTCTTCCCTTTGCTCAAGGCTCCTCCCCTAT
CTCACAGAGGACATTTATTGTTTATAGTGTGGCATACCATGGTTATTTAA
TTAATGGGCAGCCATTTTTATTATCAGACCTTACCATCAAGGTACTTTAT
GTTCGTTTCATCATCACAGCTGTATTGTTGCGTATTGAGCATN
AGTGGGAGGCCTGGCGGCGCCGGGTTTCCCCACCGCCNGAACNANAGAAG
GTTAACGGCACGCACCACCAAANAAGAAAAGAAAGGCAGNNAANAAGCCA
CAATTTTAGCCCCGCCACAANNCGCAGGGGGCAGGAANAAGGCAGGCCGG
NCCCGNGGAAGAGCNAAGAANCAAGGGGAAGGCCCNGGNGGACGGGGAAC
CNCGGCAGAANCGGGCCGGNGACAGNGCAGNCCCCAACTTTTTATGCCCC
TGGGGCTGGGGGGACTGCTATACCTTTCAGGAAGATCACCCTTAAAGAGA
CAGCTCATTTTTTTTGTGNCCCANCANCCCNGACACCANACGGGNNGGGG
GCCGGCCCCCCCCCACNCNCANACAANGACNCCCNGGGACCCANNNNACA
GCNGACCCACCCGAGGCACAGCAACCAAGCAAGCAGCCAGGGCCANACCC
ACAANAGAANCNCANCCAGCACGCCGGCCCAGCCCGGCCNACAGACCCNA
AGACAGCCAGGGGNCCGCGACACACAAAAACCCAGGAAAGCGGGGGGGGG
GCAGGCCAGAANCAAAGGACGCAACGCACGCCCCCAGACCCCCCCACCGG
GCAGCCAAACCAAGCCCCAGCCCGGCACAAAGAACCCAGCCCGACTTTTT
TTTTTTTTTACCCCCCTCCCCCCCCTTGTGCCCAACATTGTATACCCTGT
TGCCTTTTTTCCCCCATCTTCCCGTTTTATTTCCACTGTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_l17.b1 MSMg01no331_l17.b1 CHROMAT_FILE:
MSMg01no331_l17.b1 PHD_FILE: MSMg01no331_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:40 2005
         (372 letters)



>mm_chr4_147863030_147863801
          Length = 772

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttactatttccccgaatgcccagctcacttctgtactgcagtggcccttagact 64
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactatagcgccgaatgcccagctcacttctgtactgcagtggcccttagact 264

                                                                       
Query: 65  tcattgaaggcacacgctctgaatgtgacagacctggccacattggttctggagagtcca 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 tcattgaaggcacacgctctgaatgtgacagacctggtcacattggttctggagagtcca 324

                                                                       
Query: 125 gcaccagcaggtggcctttcccacactgtgctatgttcttggggccaccacttttgcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaccagcaggtggcctttcccacactgtgctatgttcttggggccaccacttttgcttt 384

                                                                       
Query: 185 atgtattttaatgaaacatcactgctttgcttatgttctgggagagctttatcatagtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtattttaatgaaacatcactgctttgcttatgttctgggagagctttatcatagtag 444

                                                                       
Query: 245 gtatgaatttactaatcagagcagaatggtggtgacataggttgccatggttgcgcctca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatgaatttactaatcagagcagaatggtggtgacataggttgccatggttgcgcctca 504

                                                                       
Query: 305 caactggcccttaaatttgatggtttctcattgtcacctatggtatcacaggcctgggga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caactggcccttaaatttgatggtttctcattgtcacctatggtatcacaggcctgggga 564

                  
Query: 365 gctgcca 371
           |||||||
Sbjct: 565 gctgcca 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)