BAC Information

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BAC

Clone NameMSMg01-331O05
Chromosome4 (Build37)
Map Location 122,647,793 - 122,648,165
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666931, LOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2
Downstream geneMycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331O05.T7 (MSMg01no331_o05.b1)MSMg01-331O05.TJ (MSMg01no331_o05.g1)
ACCAG448069AG448070
length785720
length of high quality
(start - end)
204 (115 - 318)374 (72 - 445)
definitionCHROMAT_FILE: MSMg01no331_o05.b1 PHD_FILE: MSMg01no331_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:52 2005CHROMAT_FILE: MSMg01no331_o05.g1 PHD_FILE: MSMg01no331_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTCCTCTCTTCCTTCCCTATCTCCTCCCTCCTACAACACACTTGTATT
CCTATATTTGCGGCGCTAAACGATCACTAATCATGAGAACCGTGGAATTC
TCACCTTTTCAAAAAAATGGCAGAGAACACCTGAAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGAAGATGCTG
GCGAGGATGTGGAGAAAGTGCAACACTCCTCCATTGTTGCTGGAATTGCA
TGCTTGTACAACCACTCTGTACATCAGTCTGTCGGCTCCTCAGAAAATTC
TACATAGTACTACCTTAGGATCCCACAATACCTCTCCTGACTATATATCC
AGAATATGTCCCAACCGTTAACAATGACACATGCTCCTCTATGTTCTTAA
CAGCCCCCCCCCCTTAGCCAGAAGCTGGAAAGAATTTAGATGCCCCTCAA
CATAGGAACGGATTCTTCACTTGTGCTACTTCCATTCTCCGGATTACTAC
TCATTTATTACAAAGAATGAATTTATGAACTTTCCACGCAAATGCACGTA
TCCGCACGCCTTCTTCCTGTATCGACTTCACCTTCTTACTAATGATTTCA
CATTAATATGCACCCACCTGATAAGCTAAATTTCAACTCTATCTTCCTTA
CGTATCTCCCTTTTCTTCTATACCCATCCTGCCAACATTCTTGAATACTC
ACCTAACAAACCAACTATCTCACCCGCTTTTTCTT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCAGAAATTCAAACCTAGAACTCTATCCCCAGCTCAGA
GGGTATCAGCTCCCTAATACCAGTCCAAAGGTAGAAGTCAAGGCGAGGGG
ATTTCGGATCCCAACCCAATTCGTGGCAGGAGTACCTGGGAAGGAATGTA
GAAGATGAGGTGCTATTCTGTGGTCCCTCTCACCCTGGTCTGGATGATCA
ATTGGGAGGATTTAGAAACTAGACAAAGCAGAGGAAACTTTCTTTGCAAG
GGCTGCTCCTCAGAATCCCACAGGACAGGAAATTGCTGCTGCTGCTGCTA
TTTGGTTTGGGGCAAGCCCCTTTTCTCTGGTCTCTCCACTCTCAGGTAAT
TAGCGGGTGCTTGCTGAGACCCCACACCCAGAAACAGGAGCCAGTACTAC
TACAGAAGAACCCTCTTTCAGTTTTTCTTTTGGGGAGGGTCTGGGAGTTT
TCAGACAGGCTCATATGGTCCAGTCTGGTTTTGAAGTTGATGTGTAGTCA
AGATCGCTGTGAACTCCTGATACTCCTGCCTCTTTCTGGTGCTGAAAATA
GTGTGTGCCACCAAGGGCCACTTATTCCTTACTCATCAACATCCATTGAA
TGTTTATAAAAGGTTTCCTTTTTTTTTTTTTTTTTTTTTGGATTAGGGCT
CATGTAATCTTACCTGACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_o05.g1 MSMg01no331_o05.g1 CHROMAT_FILE:
MSMg01no331_o05.g1 PHD_FILE: MSMg01no331_o05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:52 2005
         (374 letters)



>mm_chr4_122647593_122648366
          Length = 774

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaacctagaactctatccccagctcagagggtatcagctccctaataccagtccaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 caaacctagaactctatccccagctcagagggtatcagctccctaataccagtccaaagg 514

                                                                       
Query: 61  tagaagtcaaggcgaggggatttcggatcccaacccaattcgtggcaggagtacctggga 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 513 tagaagtcaaggcgaggggatttcagatcccaacccaattcgtggcaggagtacctggga 454

                                                                       
Query: 121 aggaatgtagaagatgaggtgctattctgtggtccctctcaccctggtctggatgatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aggaatgtagaagatgaggtgctattctgtggtccctctcaccctggtctggatgatcaa 394

                                                                       
Query: 181 ttgggaggatttagaaactagacaaagcagaggaaactttctttgcaagggctgctcctc 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttgggagaatttagaaactagacaaagcagaggaaactttctttgcaagggctgctcctc 334

                                                                       
Query: 241 agaatcccacaggacaggaaattgctgctgctgctgctatttggtttggggcaagcccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agaatcccacaggacaggaaattgctgctgctgctgctatttggtttggggcaagcccct 274

                                                                       
Query: 301 tttctctggtctctccactctcaggtaattagcgggtgcttgctgagaccccacacccag 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||
Sbjct: 273 tttctctggtctctccactctcaggtaattagcgggtgcttgctgagatcgtaaacccag 214

                        
Query: 361 aaacaggagccag 373
           |||||||||||||
Sbjct: 213 aaacaggagccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)