Query= MSMg01no331_o24.b1 MSMg01no331_o24.b1 CHROMAT_FILE:
MSMg01no331_o24.b1 PHD_FILE: MSMg01no331_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:56 2005
(690 letters)
>mm_chr4_17302846_17303935
Length = 1090
Score = 1239 bits (641), Expect = 0.0
Identities = 676/688 (98%)
Strand = Plus / Minus
Query: 3 ggaattcagaaatgcaagtgctcagcatttattaagcatgttatattgcaagtattagaa 62
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 748 ggaattcagaaatgcaagtgttcagcatttattaagcatgttacattgcaagtattagaa 689
Query: 63 tcatccttgtaacctttctctagaaaataataagtactatatccagtgtggaacagtgtt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tcatccttgtaacctttctctagaaaataataagtactatatccagtgtggaacagtgtt 629
Query: 123 tatactgaaggaactactcttgaaaatcctcacctgaagagataaatgtaaacattataa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tatactgaaggaactactcttgaaaatcctcacctgaagagataaatgtaaacattataa 569
Query: 183 atatgttcatcactggtacaggaaaatagatgaaaattgtgtaatttgcagcagttgtta 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 568 atatgttcatcactggtacaggaaaatagatgagaattgtgtaatttgcagcagttgtta 509
Query: 243 acaagtcatttgtagagtgtacaggaaaagaagcatggtttaaaatgatccgtgctatcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acaagtcatttgtagagtgtacaggaaaagaagcatggtttaaaatgatccgtgctatcc 449
Query: 303 catgacacatatgtgttgattaatatcatctcaggctaaacaaggagaactccaaataag 362
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 448 catgacacatatgtgttgatcaatatcatctcaggctaaacaaggagaactccaaataag 389
Query: 363 tgcatgggagatgatgctttagaacaaatatccaaacaaggagaattttaaaaaaaagta 422
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 388 tgcatgggagatgatgttttagaacaaatatccaaacaaggagaatttaaaaaaaaagta 329
Query: 423 gtataagtcaaagaacaaaaggggtgtagagttttgcaaattaatgaaaggtaacacaag 482
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 328 gtataagtcaaagaacaagaggggagtagagttttgcaaattaatgaaaggtaacacaag 269
Query: 483 ttcagcatgcaaaacccatcatctttgtatttataaattaggtacattttaaattaatgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ttcagcatgcaaaacccatcatctttgtatttataaattaggtacattttaaattaatgt 209
Query: 543 gtatattgaccaagcctgctcagtcagtcaacaggtgtggagagctgagctgcgagcaat 602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 208 gtatattgaccaagcctgctcagtcagtcaacaggtgtggagagccgagctgcgagcaat 149
Query: 603 cgccattataagatggtgctggcttccgctgtgcctacctagtanacaagccttgtgcgc 662
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 148 tgccattataagatggtgctggcttccgctgtgcctaactagtaaacaagccttgtgcgc 89
Query: 663 aagtgtgagagtgaactcacgcctagtc 690
||||||||||||||||||||||||||||
Sbjct: 88 aagtgtgagagtgaactcacgcctagtc 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_o24.g1 MSMg01no331_o24.g1 CHROMAT_FILE:
MSMg01no331_o24.g1 PHD_FILE: MSMg01no331_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:56 2005
(546 letters)
>mm_chr4_17200100_17201045
Length = 946
Score = 909 bits (470), Expect = 0.0
Identities = 519/546 (95%), Gaps = 18/546 (3%)
Strand = Plus / Plus
Query: 1 caaaataaactgaaaactttttttaaatgtatatatttttaattatatgtgaaggcctct 60
||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 201 caaaataaactgaaatctttttttaaatatatatatttttaattataagtgaaggcctct 260
Query: 61 catcctaggcctttatttgtggaacttttggatgacttatcctttatcttcacttacaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctaggcctttatttgtggaacttttggatgacttatcctttatcttcacttacaaa 320
Query: 121 agtcatttatggtcatttacaaagacctatgtatggttaatagttagcttttcaagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcatttatggtcatttacaaagacctatgtatggttaatagttagcttttcaagtttt 380
Query: 181 ttttttttttttagaattttatctacttaaattgatgtgatatattgctcataatatacg 240
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttt---------agaattttatctacttaaattgatgtgatatattgctcataatatact 431
Query: 241 catgttttcgtaagtctaactaaggtacgccaaattaattgatctcatcatagaataaac 300
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 432 catgttttggtaagtctaactaaggtatgccaaattaattgatctcatcatagaattaac 491
Query: 301 attttttattacgtattttcctcaattacatttccaatgctatcccaaaagccccccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 492 attttttattacgtattttcctcaattacatttccaatgctatcccaaaagtccccc--- 548
Query: 361 ccctcccccccactcccctacccacccattcccattttttggctctggcgttcccctgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ------cccccactcccctacccacccattcccattttttggctctggcgttcccctgta 602
Query: 421 ctggggcatataaagtttgcctgtctaatgggcctctctttccagtgttgggcgactagg 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 603 ctggggcatataaagtttgcctgtctaacgggcctctctttccagtgttgggcgactagg 662
Query: 481 ccatcttttgatacatatgcagctagagtcaagagctctgaggtactggttagttcataa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ccatcttttgatacatatgcagctagagtcaagagctctgaggtactggttagttcataa 722
Query: 541 tgttgc 546
||||||
Sbjct: 723 tgttgc 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
