Query= MSMg01no332_a11.b1 MSMg01no332_a11.b1 CHROMAT_FILE:
MSMg01no332_a11.b1 PHD_FILE: MSMg01no332_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:04 2005
(590 letters)
>mm_chr4_104778616_104779605
Length = 990
Score = 1112 bits (575), Expect = 0.0
Identities = 586/590 (99%)
Strand = Plus / Plus
Query: 1 gggaataggcctaagttaagcccttaagcattcacaataaatataagcccccgtgtcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggaataggcctaagttaagcccttaagcattcacaataaatataagcccccgtgtcact 260
Query: 61 actcaggagctggtgatcccaaagaagtttcccttacaagtaaccacagactggagcctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcaggagctggtgatcccaaagaagtttcccttacaagtaaccacagactggagcctc 320
Query: 121 ttaaacacagctgaactacatctttgtaccctttgagttattttcccaagtattttctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaacacagctgaactacatctttgtaccctttgagttattttcccaagtattttctca 380
Query: 181 gaggagcaacacacatccacacacagagctctgcatgtgaatcttcatagaggcactctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggagcaacacacatccacacacagagctctgcatgtgaatcttcatagaggcactctt 440
Query: 241 tataacagcctatatagcaagacaatgtccagcagctaagaatgtattaggatggtggca 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 tataacagcctatatagcaagacaatgtccagcagctaagaatgtaagaggatggtggca 500
Query: 301 cagacatacaatggatgatcacacaacaataaaaaggaagaaatcggctacatgttatgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagacatacaatggatgatcacacaacaataaaaaggaagaaatcggctacatgttatgc 560
Query: 361 tagatatgaacctcaaaaacaaaatactagacatagagacacctttactccatgatacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagatatgaacctcaaaaacaaaatactagacatagagacacctttactccatgatacca 620
Query: 421 attcatctttttccagcaaagacatttcttatacatattagacatagatagtggtatctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcatctttttccagcaaagacatttcttatacatattagacatagatagtggtatctg 680
Query: 481 agggttgtgggtgtgaatgatattaactgtaaatggctaaaataaatgttctacagctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agggttgtgggtgtgaatgatattaactgtaaatggctaaaataaatgttctacagctaa 740
Query: 541 gaaacaatgatggttgtggtacttggcnaaattactaaaaactgttaatg 590
|| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 741 gatacaatgatggttgtggtacttggcaaaattactaaaaactgttaatg 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_a11.g1 MSMg01no332_a11.g1 CHROMAT_FILE:
MSMg01no332_a11.g1 PHD_FILE: MSMg01no332_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:04 2005
(691 letters)
>mm_chr4_104942495_104943585
Length = 1091
Score = 791 bits (409), Expect = 0.0
Identities = 464/483 (96%), Gaps = 5/483 (1%)
Strand = Plus / Minus
Query: 1 taggctcctccttctccaatgtctttacttgttctgcttcctatggagaaggtatcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taggctcctccttctccaatgtctttacttgttctgcttcctatggagaaggtatcatta 618
Query: 61 tacccattgcacaggtaagaaaattgaggtccagaccatcaggggctatcccagcatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tacccattgcacaggtaagaaaattgaggtccagaccatcaggggctatcccagcatcac 558
Query: 121 tcaggtaataagtggcagaatcaggctgtagccccgtctagtatgtgggtgccactcctc 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 557 tcaggtaataagtggcagaatcaggctgtagccccgtctagtatatgggtgccactcctc 498
Query: 181 aggctgcctcttgaacaccacatcccaacgtctgggtctttcccttgcagtgccacttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggctgcctcttgaacaccacatcccaacgtctgggtctttcccttgcagtgccacttcc 438
Query: 241 ccgtgtatgatttggaacaaatttgttatccccttctttttcagcttctcctgtattatc 300
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 437 ccgtgtatgatttggaacaaatttgttatccccatccacttcagcttctcctgtattatc 378
Query: 301 aaaggtttcaagtgacctccaggaaagaagaagaaagaaagaaagaaagaaagaaagaaa 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 377 aaaggtttcaagtgacctccaggaaagaagaaaaaagaaagaaagaaagaaagaaagaaa 318
Query: 361 gaaagaaagaaagaaagaaagaaagaaagaaagaaag--aaagaaagaaagaaagaaaga 418
||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 317 gaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaaagaacgaaagaacgaaaga 258
Query: 419 aagaaagaaagaaagaaagaaagaaaagaacgaaaagaacgaaaagaacgaaagaacgaa 478
| ||||||| ||||||||||||| |||||| | |||||| | |||||| ||||||| |||
Sbjct: 257 acgaaagaacgaaagaaagaaag-aaagaaag-aaagaaag-aaagaaagaaagaaagaa 201
Query: 479 aga 481
|||
Sbjct: 200 aga 198
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 260
Number of extensions: 91
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
