BAC Information

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BAC

Clone NameMSMg01-332H21
Chromosome4 (Build37)
Map Location 48,131,613 - 48,131,941
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332H21.T7 (MSMg01no332_h21.b1)MSMg01-332H21.TJ (MSMg01no332_h21.g1)
ACCAG448512AG448513
length1,2631,255
length of high quality
(start - end)
629 (136 - 764)---
definitionCHROMAT_FILE: MSMg01no332_h21.b1 PHD_FILE: MSMg01no332_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:59 2005CHROMAT_FILE: MSMg01no332_h21.g1 PHD_FILE: MSMg01no332_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNGGCAGCCAGTTGNNNACATTGGGCGCTAAGACTCCTATGGGAGAGG
ATCCGCGGAATTCACATTGTTCTAGNTCCTCCCACTGCCCTNTCNAAAGN
ANNNNAGGNTGAGGGGNTTCATTAAAAACCCTCTATTCTCTCACACTCTA
GAGACTGTATGTCTGAGATCAGGGTGCTCCACGATCATTTATTCCTGCAG
GCTGTGAAGAAGGGATGTGTGCCAAGTCTCTTGGCTTGATGCTCAGGTGT
TCTTTTCTCACTAAATCTTCATACTGCCTTCTCTCTTCACGTCTGTCCAA
ACATTTCCCTTTTGTAATACACTGTTCACAACCAGTTAGGACCCACCCTA
GTGACATCATTTTAATTTAATTGCCTCCTTAAAGACACTATTTCCAATCC
AGTCCTATTCTTTTTAACTGGGAATTGGCACTTGACAAATGAATATTTAT
AGGTACCCAGTTCAGCTCACCATATGCAATGATACCATAAAAGATGGAGA
GGCTACATTAACACCAGATAAAGCAGACTTCAGGAGCTGGAGAGGTGGCT
CAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCC
CAGTAACCACATGGTGGCTCACAACCATCTGTAATGGGATCAGATGCCCT
CTTCTGGTGTGTCTGAAGACATAGACAGTGTAGTCATATACATAAAATAA
ATAAATCTTTAAAAAAAAAAAGACTTCAGAACAAGGAAAGTCATCAGGGT
AAAGAACATGGGACCAAATATTAAAGGGCTCAACCCTCCTAGATAACAAT
GGAGGGCAAAATGTATGAGGCAAATGCTGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGATAGAGAGAGAGAGATATATAATGTNTNAGAGACCCTTT
CCCCCCGGGGGAAAATTAAATCTGGAAACTGGCCTTTCTTTCATGCCGNA
GGATTGTTTTGTTGAACCGTGGGTTTAAAAAAGAAAAATTATTTTTTGGG
CCCAAATTCTTCCCTCCCCTTGGAAAAAGGGGGAAACTCTTTCCCGATTA
TGAAAATCCTCAGCTTTTAAACGGAATCTTCCCTGACCTTTTTTCTCCCC
TAGGGAAATCTAAAATGGAAAAAAAAATGTTAGACCGTTTCTTTAAAATC
CAAGGCACCATTTTACCCTAGGAGTTCCTTCCNATTTCTGTTAAGATTGG
GGTTTTTTTCCAACNAATTTTTATATCCAATANGTTTTTCAAATAANCTT
TATATAAANATNA
NCCCGCAGTTTTNNAACAGATGTGAGCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTCACTCTCTCCCAGGNTGGNC
TTGAANTCATAGAGACCCTTAAAAGGCCCCCCCCNNAGNGAGGAGAANAA
AAGGGNGGANCANCAAACCCAGCCCNCACANCANNNNNNACAGGANAGAA
CCCCAGGNGACACAAGGNAAAACAGCCACAGCAANCCAANNGGGAAACAG
GGAAAGGGGGNAANNAANACCAAAGGACAANNNCAACACGGANNCNCAAA
GAGGNNCAGAGANAANACNANANAANACNAACGGGNAGCNCCAGGAGAGC
CNCNCGGCCAGGGACANAGACAGACGAACGCGGGNCNAACNNCCGGACAC
NACACCAAATTTTTACAGNGGAGANNAGNGCAGAGANACAGAAGGGAGAC
GGNCNACCAAAGGGNCNCCCGGCNGCCNCCGGCANCNCAGGNGAGCCNNA
GGAGGGCACACAGACACAAGGCACNCCAGGAAGGGAANCGGNGACAAGNG
CCGGAAGNGCCGGNCGNCGGCNCGGNNGANNANGCACAGGCNNGAAAGAG
CAGAAGNGCAGGAAGCGAGGCGGGCAGGCCACGGGCNCGNCNCGGCGAAC
CGGACNNGCGCNCNNGCCACCAAANNNCGGCACAGAGGCAAGCGGCAGGG
GNCCCCACAGGCGCCAAGGCNNCCCNCAAGAAGGANNCCAGAGNACNCCC
ACGCNNNGACAAACACNCNNCACGGAACCGGGGAGAAGAANNCANCNAAN
GCCNNNCGNGAGNNGAGNGNGGCCAACCAACCACANAAAAANNNNCCAAA
ACCAAACAACAAAACCACCCAAAAACCCNCANAAGGGCCCCAGNGGAACC
CANCCCCGGGGGGNCGGCCAGAAAGAGNAAGCCGNGGGGAAAAAAAAAAA
AAAAGAACCCNCAAAAGGACGGGAAGGAGCGGAACCCCCGGCCAAGGNNA
ACCGGAAGCAACCAACGGAGCGCGGGAAAGGGCCCGCCCCAGGAAAAAAN
CCAAGGCCCGGAAAAAACAAGGGAAAGAAGGCCCCCCAAAAAAACNAAAA
AAAACAGGGCCGGGCGGCCCGGGGAAAGAANGGGGGAAAACAACACNACA
AAAAAAGCGAAAAAAAAACCCAAAACNNAAAAAAAGAAAAAAGCGGCCCA
AAAAAGGGGGCGCCGCACAAAAAAAAGAGGGGGGAGAGNACCCCGGGGAC
CGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_h21.b1 MSMg01no332_h21.b1 CHROMAT_FILE:
MSMg01no332_h21.b1 PHD_FILE: MSMg01no332_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:59 2005
         (629 letters)



>mm_chr4_48131613_48132641
          Length = 1029

 Score =  590 bits (305), Expect = e-172
 Identities = 323/333 (96%), Gaps = 8/333 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctctcacactctagagactgtatgtctgagatcagggtgctccacgatcatttattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttctctcacactctagagactgtatgtctgagatcagggtgctccacgatcatttattcc 270

                                                                       
Query: 61  tgcaggctgtgaagaagggatgtgtgccaagtctcttggcttgatgctcaggtgttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgcaggctgtgaagaagggatgtgtgccaagtctcttggcttgatgctcaggtgttcttt 210

                                                                       
Query: 121 tctcactaaatcttcatactgccttctctcttcacgtctgtccaaacatttcccttttgt 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 209 tctcactaaatcttcatactgccttttctcttcacgtctgtccaaacatttcccttttgt 150

                                                                       
Query: 181 aatacactgttcacaaccagttaggacccaccctagtgacatcattttaatttaattgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aatacactgttcacaaccagttaggacccaccctagtgacatcattttaatttaattgcc 90

                                                                       
Query: 241 tccttaaagacactatttccaatccagtcctattcttttt----aactgggaattggcac 296
           || ||||||||||||||||||||||||||||||||    |    ||||||||||||||||
Sbjct: 89  tctttaaagacactatttccaatccagtcctattc----tagagaactgggaattggcac 34

                                            
Query: 297 ttgacaaatgaatatttataggtacccagttca 329
           |||||||||||||||||||||||||||||||||
Sbjct: 33  ttgacaaatgaatatttataggtacccagttca 1



 Score = 56.8 bits (29), Expect = 5e-12
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 586 agacttcagaacaaggaaagtcatcaggg 614
           |||||||||||||||||||||||||||||
Sbjct: 714 agacttcagaacaaggaaagtcatcaggg 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)