Query= MSMg01no332_l16.b1 MSMg01no332_l16.b1 CHROMAT_FILE:
MSMg01no332_l16.b1 PHD_FILE: MSMg01no332_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:29 2005
(468 letters)
>mm_chr4_36688336_36689203
Length = 868
Score = 890 bits (460), Expect = 0.0
Identities = 466/468 (99%)
Strand = Plus / Plus
Query: 1 ttgattttatatctagggaatggcttgtgttgtgcttcagccccttctcactcaaaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgattttatatctagggaatggcttgtgttgtgcttcagccccttctcactcaaaaccc 260
Query: 61 tctgtgctttaatttttatcttttaggaaatgaggagtcatatcaacattaagatagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgctttaatttttatcttttaggaaatgaggagtcatatcaacattaagatagaag 320
Query: 121 cagtcacaaattggaagggaaggggtgacactgaggagttggggaggaaaacatgaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtcacaaattggaagggaaggggtgacactgaggagttggggaggaaaacatgaggag 380
Query: 181 ggacgatgtagaagcagtactcgtgtgtgaagttttcaaaattaaataaactaaaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacgatgtagaagcagtactcgtgtgtgaagttttcaaaattaaataaactaaaaatca 440
Query: 241 catctgcttcatcatctttaggaaattgctcagttcactatacaatagtttattaactga 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 catctgcttcatcatctttaggaaattgctcagttcactaaacaatagtttattaactga 500
Query: 301 cctgtaacacatgcatgtgctcatggtaattaagttgtattgttgaaagcagtgattttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgtaacacatgcatgtgctcatggtaattaagttgtattgttgaaagcagtgattttt 560
Query: 361 gtatggttattttatttatttttgcaataataaggcattgtgttttagtatagataggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtatggttattttatttatttttgcaataataaggcattgtgttttagtatagataggat 620
Query: 421 ggtgtcttagtcagggtttctattcctgcacaaacatcgtgaccaaga 468
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ggtgtcttagtcagggtttctattcctgcacaaacatcatgaccaaga 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_l16.g1 MSMg01no332_l16.g1 CHROMAT_FILE:
MSMg01no332_l16.g1 PHD_FILE: MSMg01no332_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:30 2005
(638 letters)
>mm_chr4_36814382_36815419
Length = 1038
Score = 934 bits (483), Expect = 0.0
Identities = 529/565 (93%), Gaps = 32/565 (5%)
Strand = Plus / Minus
Query: 1 gtcagccatgttaaacctgagatgagtacatatttcttcacaactctgcaatatatatat 60
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 533 gtcagccatgttaaacctgagatgagtagatatttcttcacaactctgca---------- 484
Query: 61 gtatatatatatatatatatatatatatatatatatatatatatatatatataatcactt 120
|||||||||||||||||| |||||||||||||||||||
Sbjct: 483 ----------------------atatatatatatatatatgtatatatatataatcactt 446
Query: 121 gaaattatttactaaagtgtatgtacaaataatataattaaaacacaaaattatatttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaaattatttactaaagtgtatgtacaaataatataattaaaacacaaaattatatttca 386
Query: 181 aaagaattgtttctgtctatagtttgaaattcaaatctcttaagtattgacacggttgag 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 aaagaattgtttctgtctatagtttgaaatccaaatctcttaagtattgacacggttgag 326
Query: 241 gtttatacatgtataccaatatgccaggcagtatgtaccctcaggcacagtagtgacaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttatacatgtataccaatatgccaggcagtatgtaccctcaggcacagtagtgacaca 266
Query: 301 acagtcatggatgcaaacaactgatggtgtttggtaatgcatgcgatgggcctgtcacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acagtcatggatgcaaacaactgatggtgtttggtaatgcatgcgatgggcctgtcacat 206
Query: 361 tgcattttgaacatcaatgtttatatccatagcattctgtggagagaaatgtctttgtag 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgcattttggacatcaatgtttatatccatagcattctgtggagagaaatgtctttgtag 146
Query: 421 tgggcactggttgttacagagattctaacagggaattttctgaaaataaatgactgttcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tgggcactggttgttacagagattctaacagggaattttctgaaaataaatgactgttcc 86
Query: 481 catagcccaaggattcagtgaatgattagggagagtaaagaataatgtacaaaatataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 catagcccaaggattcagtgaatgattagggagagtaaagaataatgtacaaaatataat 26
Query: 541 ggagatatttccaaagtgataggaa 565
|||||||||||||||||||||||||
Sbjct: 25 ggagatatttccaaagtgataggaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
