BAC Information

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BAC

Clone NameMSMg01-333A15
Chromosome4 (Build37)
Map Location 134,799,375 - 134,958,122
singlet/doubletdoublet
Overlap geneClic4, LOC676072, Srrm1, A330049M08Rik
Upstream geneZfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3
Downstream geneLOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333A15.T7 (MSMg01no333_a15.b1)MSMg01-333A15.TJ (MSMg01no333_a15.g1)
ACCAG448904AG448905
length744741
length of high quality
(start - end)		488 (74 - 561)345 (76 - 420)
definitionCHROMAT_FILE: MSMg01no333_a15.b1 PHD_FILE: MSMg01no333_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:07 2005CHROMAT_FILE: MSMg01no333_a15.g1 PHD_FILE: MSMg01no333_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,799,375 - 134,799,828)(134,957,778 - 134,958,122)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCTTTACCTCTACCGATAATCTAGAGCACATACAGAGCAATGTATTAC
CAAAACAATGGCTTACATGTTTTAATATTCCATTTACCTTTAGTATAGAT
TTTCTTGATCTAAATTAATGCCTTGTGGGTGTGGAAGTCCACACCTGTGG
TCCCAGAATGCAGGAGGCAGAGGCAAGAGGACTGAGCGTCATACTAGCAG
ACGACACAGTAAATTTGAGGCCAGCACTTCTTGAACCTTCAGAGCAGTGG
TTTCTCAAACCTTCCTAATGCTGGGACCTTTTAATACAGTTCTTCATGTT
GTGGTGAACCCAACCATAAAATTATTGTGTTGCTCTTGCATTAACTGTAA
TTTTGCTACTGTTGTGAACCACCACGCAAATATCTGATATATGGTATGTC
TGATGCATTACCCCAAAAGGATCGCAAGTTGAGAACCACTTCTATAGAAC
AAAACTCCATGTAAAAACCACAACTAATGAGAAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGNNNN
GNNNGNNNNNGGGNNNNNNNNNGNNNNNNNNGNNNNGNNNNNNGGGGGGN
NNGNNNNGGGNGGGNNNGGGGGNNNNNNNGNNNNGGNNNNGGNNNNGGGN
NGNGGGGNGNGGGNNGNNNGGGGNGGGGNGGGGGGGGGGGGGGG

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAAGCCATCAGCCTGGAAA
ACTGGCTCCCACACGCACGCTCTAGTTCTAGTGTAATCACTGTGTACTTA
GGTGTCTCTGAGCCAGTGTTGGCTCCCCACTGAGACTACACTTTAATCCC
GTACAACAACGTGTGCCTGTTCCCCAGCAACCGTCTTCAAAGCCATAAAC
GGCAGACCACAGCTTTGAGAGAAGAGACTGGGCAATCCTAACTGAGATAA
AACCAACTTCCAGGGCCAGGCTGGGGCTGAGGCTCAGCGGGGAGAGTGTT
CTCTTAATGTTCACAAAGTCCTGGGCTCTATTCCTAGCACCAAACAATGA
GACTGTGTCTCAAAACGGAACACCCCACTCAGTGCCCAAGGATAGGGCTT
CCCTGAGGCATCCTGTGCTAACAAACTTGGAAGGAGCCTGATGCATTTGG
GGGCTTTCCCCTGAAAAGAGATATCTCTCCCCTCCCCAAATTCCTTTTCT
CCTCTTCCTCTTCTTCCTCCTCCTTTTTTGTTTGTTTGGAGTCTTTTGTT
TTGTTTTGAGACTGGGTCTTATTATGTAGCCCAGGATTGCCTAAAATTCA
CTATGCAGACCAAGGCAGTCTGGGTCTCTCCTTCTGCCTCAGGTTCTGTA
GTTCTCAATACTGAATACAGTCATCAAGCACCACACCAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_a15.b1 MSMg01no333_a15.b1 CHROMAT_FILE:
MSMg01no333_a15.b1 PHD_FILE: MSMg01no333_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:07 2005
         (488 letters)



>mm_chr4_134799175_134800062
          Length = 888

 Score =  777 bits (402), Expect = 0.0
 Identities = 441/454 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagagcacatacagagcaatgtattaccaaaacaatggcttacatgttttaatattccat 60
           ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tagagcacacacagagcaatgtattaccaaaagaatggcttacatgttttaatattccat 260

                                                                       
Query: 61  ttacctttagtatagattttcttgatctaaattaatgccttgtgggtgtggaagtccaca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacctttagtgtagattttcttgatctaaattaatgccttgtgggtgtggaagtccaca 320

                                                                       
Query: 121 cctgtggtcccagaatgcaggaggcagaggcaagaggactgagcgtcatactagcagacg 180
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 321 cctgtggtcccagaatgcaggaggcaggggcaagaggactgagtgtcatactagcagacg 380

                                                                       
Query: 181 acacagtaaatttgaggccagcacttcttgaaccttcagagcagtggtttctcaaacctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagtaaatttgaggccagcacttcttgaaccttcagagcagtggtttctcaaacctt 440

                                                                       
Query: 241 cctaatgctgggaccttttaatacagttcttcatgttgtggtgaacccaaccataaaatt 300
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 441 cctaatgctgggaccttttaatacggttcttcatgttgtggcgaacccaaccataaaatt 500

                                                                       
Query: 301 attgtgttgctcttgcattaactgtaattttgctactgttgtgaaccaccacgcaaatat 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||  | | ||||||
Sbjct: 501 attgtgttgctcttgcattaactgtaattttgctactgttgtgaatcaagatgtaaatat 560

                                                                       
Query: 361 ctgatatatggtatgtctgatgcattaccccaaaaggatcgcaagttgagaaccacttct 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 ctgatatatggtatgtctgatgcattaccccaaaagggtcgcaagttgagaaccacttct 620

                                             
Query: 421 atagaacaaaactccatgtaaaaaccacaactaa 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 621 atagaacaaaactccatgtaaaaaccacaactaa 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no333_a15.g1 MSMg01no333_a15.g1 CHROMAT_FILE:
MSMg01no333_a15.g1 PHD_FILE: MSMg01no333_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:07 2005
         (345 letters)



>mm_chr4_134957578_134958322
          Length = 745

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcaaaagccatcagcctggaaaactggctcccacacgcacgctctagttctagtgta 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 545 atttcaaaagccatcagcctggaaaactggctcccacatgcacgctctagttctagtgta 486

                                                                       
Query: 61  atcactgtgtacttaggtgtctctgagccagtgttggctccccactgagactacacttta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atcactgtgtacttagttgtctctgagccagtgttggctccccactgagactacacttta 426

                                                                       
Query: 121 atcccgtacaacaacgtgtgcctgttccccagcaaccgtcttcaaagccataaacggcag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 425 atcccgtacaacaacgtgtgcctgttccccagcaaccctcttcaaagccataaacggcag 366

                                                                       
Query: 181 accacagctttgagagaagagactgggcaatcctaactgagataaaaccaacttccaggg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 accacggctttgagagaagagactgggcaatcctaactgagataaaaccaacttccaggg 306

                                                                       
Query: 241 ccaggctggggctgaggctcagcggggagagtgttctcttaatgttcacaaagtcctggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ccaggctggggctgaggctcagcggggagagtgttctcttaatgttcacaaagtcctggg 246

                                                        
Query: 301 ctctattcctagcaccaaacaatgagactgtgtctcaaaacggaa 345
           |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 245 ctctatccctagcaccaaacagtgagactgtgtctcaaaacggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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