CATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAAAAGAGCGCGGAAT
TCTGGTTTGTCCCTATCTTAAGTGAGTGCCTCCCTTCCACGTGTGCACAT
GCGTGTGTGTGTGCATGCTGTTCTCTGAAGCTCCACCCTGAAGAGTGTCT
TCTGGTCTTCTGATGTCTACATCTCAGTTTGGAATTGCCTCTGACCAATT
TCCAGCAGCCATAGCATCTAAGTAGCATCACAGGAGGCAGCTTTAACCAA
GCCCATTCTAGCAGATAACACTGAATATTCTGTTAATATTCATAGTCACA
TAAAAGAAATTCCAGTTTTCAAAACCCACTCTGTGTGCGTGTTAGTATGT
GTGTTAATATTCTCTGGTGTTGCCCACACTGGCTAATTGACAATTACTGT
AGAAAGGATTTCTCCTCGCCTGCACCAAATGACAACTCTGGGACTCCAGT
GCTTTTGTATATGAAGATGATAAAAACAGTTTAGATGAAGCACTTTTCAA
AAAAGGGAAATTAAAAAATAAACAGGAAGTACAATTAATTTTAGTAATAT
ATTTCATTTTTCTGTATATACCACCAATCTTACCCCAACAGAATCAAACT
ATGGAAATCATTTATAATATTCTTTACACTTCCTCCCCCTCCTACCATGC
TAAGTCTCTAAACTCTGGTACTTATAGCAAAGCTAGATCCAAAGCAG

NCCCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGTACTTCTTTAGAG
CTGATTTAGTGGTGATAAATTCCTTTAGTCTTTGGGTATATTAATCTGGA
TTGCCAATTATTACCTTAGAACTTGAAATACATCAGTCCAAGCCCTTTTG
GATTTTAAATTTTTAGTTGAAAATTTAAACAAGAACAAGAATAACAAGAA
CAAGAATAACAAGAACAAGAATAACAACAACAACAACAACAACAAGAACC
ACACCAAAAACCAAACCAACCAATCAACCATCCAACCTACCAACTAACCA
ACAAACCAAGCATCCAACCAGACAGAACAAGCATATTACTAGGATATTAG
TTGCTACTGTTACTCTTTTATGTCTGCCCGCCGTTTCTTGCTTGCGACTT
TCAATCTTTTTTTTTAATTCTGTATACTTAATAATTTAATTATAAAAATT
ATGAAGAGAGTTTCTTTTCTGGTTTGGTTTGTTGCTGTCCTAAATACTCA
CTGTACTTGGATTGGCATCTTTTTTTTCTCACACTGAATTTTTTGGGGGA
GCAAGATTCATTTGAAAATATTTTCTATATATTTAGAAGAATGTTTTTTA
TGTCTGTGACCTATAAGTAATTTCAGAATGTTATGTATAGTTTAGAATTC

Query= MSMg01no333_f18.b1 MSMg01no333_f18.b1 CHROMAT_FILE:
MSMg01no333_f18.b1 PHD_FILE: MSMg01no333_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:31 2005
         (371 letters)



>mm_chr4_54674937_54675708
          Length = 772

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%), Gaps = 1/370 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctggtttgtcc-ctatcttaagtgagtgcctcccttccacgtgtgcacatgcgt 60
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctggtttgacaactatcttaagtgagtgcctcccttccacgtgtgcacatgcgt 261

                                                                       
Query: 61  gtgtgtgtgcatgctgttctctgaagctccaccctgaagagtgtcttctggtcttctgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtgtgtgtgcatgctgttctctgaagctccaccctgaagagtgtcttctggtcttctgat 321

                                                                       
Query: 121 gtctacatctcagtttggaattgcctctgaccaatttccagcagccatagcatctaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtctacatctcagtttggaattgcctctgaccaatttccagcagccatagcatctaagta 381

                                                                       
Query: 181 gcatcacaggaggcagctttaaccaagcccattctagcagataacactgaatattctgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcatcacaggaggcagctttaaccaagcccattctagcagataacactgaatattctgtt 441

                                                                       
Query: 241 aatattcatagtcacataaaagaaattccagttttcaaaacccactctgtgtgcgtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatattcatagtcacataaaagaaattccagttttcaaaacccactctgtgtgcgtgtta 501

                                                                       
Query: 301 gtatgtgtgttaatattctctggtgttgcccacactggctaattgacaattactgtagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtatgtgtgttaatattctctggtgttgcccacactggctaattgacaattactgtagaa 561

                     
Query: 361 aggatttctc 370
           ||||||||||
Sbjct: 562 aggatttctc 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space:   276206
Effective search space used:   276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)