Query= MSMg01no333_h15.b1 MSMg01no333_h15.b1 CHROMAT_FILE:
MSMg01no333_h15.b1 PHD_FILE: MSMg01no333_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:40 2005
(586 letters)
>mm_chr4_141990205_141991192
Length = 988
Score = 930 bits (481), Expect = 0.0
Identities = 533/553 (96%), Gaps = 6/553 (1%)
Strand = Plus / Minus
Query: 38 ctcttctttatgtgcattggtggtttgcctgtacgtgggtatcaaatcttggagttacag 97
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 988 ctcttctttatgtgcattggtggtttgcctgcatgtgggtatcaaatcttggagttacag 929
Query: 98 acgcttttaagctgccatgtcatgctgggaattgaacccgggtcctctggaagagcagtc 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 acgcttttaagctgccatgtcatgctgggaattgaacccgggtcctctggaagagcagtc 869
Query: 158 agttgtcttaaccactgagcactgggggtagaacccatggtttcattcctgccaggcaag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 agttgtcttaaccactgagcactgggggtagaacccatggtttcattcctgccaggcaag 809
Query: 218 cactccatcaactaagctatagtccattcttgcctattcttacacatgctactaccagcc 277
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 808 cactccatcaactaagctatagtccattcttgcctactcttgcacatgctactaccagcc 749
Query: 278 tgagagtcgagctttggggacactcacatgggtagactcccagatctttcccatactcat 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgagagtcgagctttggggacactcacatgggtagactcccagatctttcccatactcat 689
Query: 338 tccctcccgcagatggagagagcagagtttgggtaacagaaagatttaagaacacatctc 397
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tttctcccgcagatggagagagcagagtttgggtaacagaaagatttaagaacacatctc 629
Query: 398 ctgggttcctaggtatgttggccaccctgagagcccagccatgtcctcctgactctggat 457
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctgggttcctaggtatgttagccaccctgagagcccagccatgtcctcctgactctggat 569
Query: 458 acattataagtcattgggct----tttcaatggttcaacaaagtgaacttatgtttccca 513
||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 568 acattataactcactgggcaaggatttcaatggttcaaca--gtgaacttatgtttccca 511
Query: 514 gctccttcattttaaaattatcttctcaaccctttgataatgtagcaatttggataagtc 573
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 510 gctccttcgttttaaaattatcttctcaaccctttgataatatagcaatttggataggtc 451
Query: 574 tcccagtcattag 586
|||| ||||||||
Sbjct: 450 tcccggtcattag 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 988
Length adjustment: 10
Effective length of query: 576
Effective length of database: 978
Effective search space: 563328
Effective search space used: 563328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_h15.g1 MSMg01no333_h15.g1 CHROMAT_FILE:
MSMg01no333_h15.g1 PHD_FILE: MSMg01no333_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:40 2005
(344 letters)
>mm_chr4_141818395_141819138
Length = 744
Score = 580 bits (300), Expect = e-170
Identities = 333/344 (96%), Gaps = 3/344 (0%)
Strand = Plus / Plus
Query: 1 acag-tttttggctatgttgacaaccc-ctaatctttctgtctctctctattctgctcag 58
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 200 acagttttttggctatgttgacaacccgc-aatctttctgtctctctctattctgctcag 258
Query: 59 tgctggggtcacaggcatgtacagggccacggccagcctgtgctggaatctgaaccccag 118
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 tgctggggtcacaggcatgtacagtgccacggccagcctgtgctggaatctgaaccccag 318
Query: 119 ttctcatgagtgggtggcaagcactttaccctctaagccatctccccagtccctgaggat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttctcatgagtgggtggcaagcactttaccctctaagccatctccccagtccctgaggat 378
Query: 179 gacgcttctaagggttacccatgtgtcccgagggagcagaggtggctggggtgtcctggg 238
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgcttctaagggttacccatgtgtcccgagggagcagaggtggctggggtgtcctggg 438
Query: 239 taccagaggattatgacagcaagggaacatataggaagggagaccaagtttggctcacac 298
|||||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 taccagaggaagaggacggcaagggaacagataggaagggagaccaagtttggctcacac 498
Query: 299 tgttcttcctgtccggcttgcttgggatggtgatactcgctatg 342
|||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgttctacctgtccggcttgcttgggatggtgatactcgctatg 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
