BAC Information

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BAC

Clone NameMSMg01-333L18
Chromosome4 (Build37)
Map Location 109,783,538 - 109,784,012
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1, Dmrta2
Downstream geneElavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333L18.T7 (MSMg01no333_l18.b1)MSMg01-333L18.TJ (MSMg01no333_l18.g1)
ACCAG449409AG449410
length731725
length of high quality
(start - end)		651 (47 - 697)639 (75 - 713)
definitionCHROMAT_FILE: MSMg01no333_l18.b1 PHD_FILE: MSMg01no333_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:59 2005CHROMAT_FILE: MSMg01no333_l18.g1 PHD_FILE: MSMg01no333_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCACCAACATGTCCCCAACTCCCACCCAGGACCTTTGTATTTTTCA
TTTCCTCTTCCTAGAAAAGTCCTCCCTAGACACCCACCTCACTGGCCTCC
TTCAAATCTTTGTCCAAGTATCATCTTTCCAACAGGACCTCCATTCCCCA
TACCCCAGCACCACCTGATCTTCCCCTCCACCTTTGCTCGTGAGATTCCA
GACTACCTTTCACCATCTATCACACTATATGGGGCATTCTTTATTGGCCC
CTCCAGCCCTAGACCTCACCTCCATGAATCAGGGCTCATTCTGCTTTGTT
CTCTGCTCTGTTTCCAGCATGAGTAGCAGTTGCCGGCACACTGAAAGTGC
TCTGCTTGTTGAGTGTGTGAATCACATGTCACAATTTAATACCATCTCTG
CAGCACTGTTCCAAACTGCTGAGTCCTGCCACTGGTCCTCCCTGGATCAC
TAACACAACCTCCCAGAATGAGTTCATCCTTTGCATGGCTTCCAGTGATT
TTCTTCTGATGATAATGCTCAGACCTTTACCACTAGAACTGAGTGCACTC
TGCTCATTGGTACAAGTGACAAGCAGAGAACATTTCCATCCAGGTCCCAC
CTGAGTCAGGACCCAAATGTACACCTCCTCTTGAGGTCTCATCTAGTAGT
CTGCCAAGACAGGAACCTGAAGGNCAGCTTC

CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTTTTATCATGGAATACTTTGGTT
TCTCTATCTATGGTAATTGAGAGTTTTGCTGGGTATAGTAACCTGGCCTG
GCATTTGTGTTCTCTTAGGGCCTGCATAACATCTTTCCAGGATCTTCTGG
CTTTCATAGTCTCTGGTGAGAAGTCTGGTGTAATTCTAATAGACCTGCCT
TTATATGTTACTTGACCTTTTCCCCTGACTGCTTTTAATATTCTATCTTT
ATTTAGTGCATTTGTTGTTCTGATTATTATGTGTCGGGAGGAATTTCTTT
TCTGGCCCAGTCTATTTGGAGTTCTGTAGGCTTCTTGTATGTTCATAGGC
ATCTTTTTCTTTAGGTCTGGGAAGCTTTCTTTTATAATTTTGTTGAAGAT
ATTTGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTACTCCTATTA
TCCTTAGGTTTGGTCTTCTCATTGTGCCCTGGATTTCCTGGATATTTTGA
GTTAGGATCTTTTTGCATTTTGCATTTTCTTTGATTGTTGTGCCCATGTT
CTCTATGGAATCTTCTGCACCTGAGGTTCTCTCTTTCATCTCTTTATTTT
GTTGCTGATCGAATCTATGGTTCCTGATTTCTTTCCTAGAGTTTCTATCT
CCAGAGTTGTCTCACTTTGGGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_l18.b1 MSMg01no333_l18.b1 CHROMAT_FILE:
MSMg01no333_l18.b1 PHD_FILE: MSMg01no333_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:59 2005
         (651 letters)



>mm_chr4_109782962_109784012
          Length = 1051

 Score =  903 bits (467), Expect = 0.0
 Identities = 473/475 (99%)
 Strand = Plus / Minus

                                                                        
Query: 177  cccctccacctttgctcgtgagattccagactacctttcaccatctatcacactatatgg 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 cccctccacctttgctcgtgagattccagactacctttcaccatctatcacactatatgg 992

                                                                        
Query: 237  ggcattctttattggcccctccagccctagacctcacctccatgaatcagggctcattct 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991  ggcattctttattggcccctccagccctagacctcacctccatgaatcagggctcattct 932

                                                                        
Query: 297  gctttgttctctgctctgtttccagcatgagtagcagttgccggcacactgaaagtgctc 356
            |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 931  gctttgttctctgctctgttcccagcatgagtagcagttgccggcacaccgaaagtgctc 872

                                                                        
Query: 357  tgcttgttgagtgtgtgaatcacatgtcacaatttaataccatctctgcagcactgttcc 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  tgcttgttgagtgtgtgaatcacatgtcacaatttaataccatctctgcagcactgttcc 812

                                                                        
Query: 417  aaactgctgagtcctgccactggtcctccctggatcactaacacaacctcccagaatgag 476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  aaactgctgagtcctgccactggtcctccctggatcactaacacaacctcccagaatgag 752

                                                                        
Query: 477  ttcatcctttgcatggcttccagtgattttcttctgatgataatgctcagacctttacca 536
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751  ttcatcctttgcatggcttccagtgattttcttctgatgataatgctcagacctttacca 692

                                                                        
Query: 537  ctagaactgagtgcactctgctcattggtacaagtgacaagcagagaacatttccatcca 596
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  ctagaactgagtgcactctgctcattggtacaagtgacaagcagagaacatttccatcca 632

                                                                   
Query: 597  ggtcccacctgagtcaggacccaaatgtacacctcctcttgaggtctcatctagt 651
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  ggtcccacctgagtcaggacccaaatgtacacctcctcttgaggtctcatctagt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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