TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGAACCGCGGA
ATTCTTTGTTCTGTCCTGAGCGCCAATTTTTAATGGGGTTATTTGACTTT
CTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCT
GTCTGATTCAGGATAGGTAAAGATCCTTTCCCAATCTGCTGGTGGCCTTT
TTGTCTTATTGAAGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATG
ATGCATGGGGCAATTTCAATATTTTTGTATCTGTTGAGGGCTGTTTTGTG
ACCAATTTTATGGTCAGTTTTGGAGAAGGTCCCGTGAGGTGCTGAGAAGA
AGGTATATCCTTTTGTTTTAGGATAAAATGTTTTGTAGATATCTGTTAAG
TCCATTTGTTTCATAACTTCTGTTAGTTAGGATGTTGTCCCTATGCTGTC
TATTGGGTCTAGCCAAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAAC
CAGCTCCTCATTTGGTTGATTCTTTGAATAGTTCTTCTTGTTTCCACTTG
GTGATTTCTGCCATGAGTTTGATTATTTCCTGCCATCTACTCCTCTTGGG
TGAATTTGCTTCCTTTTGTTCTAGAGCTTTTAGGTATGTTGTTAAGCTGC
TAGTGTGTGCTCTCTCTAGTTTCTTTTTGGAGGCATTCAAAGCTATGAGT
TTTCCTCTTAGAAATGCTTTCATTGTGTCCCTTAAGTTTGGGTAT

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTATTT
AATACAGTTATTTGATTTTCTGGAGTCCAACTTCTAAAGTTCTTTGTACA
TATTGGATATTAGTCCTCTATCACATTTAGGATTGGTAAAGATCCTTTCC
CATGCTCTCATGTGAGGACTGATCTCTGAGAGACCCAGGATACAAGATAG
TGCTCTCCCCTGAGTCCCAGTTGTAATGGCAATGAAGCAAAATGATGACA
AGAACTTCAATGTATCTCCCAAGTTGCAATATAGGCATTTGTATCTTGTG
ATTAACATGTAGCCCAATAAATAGACTTAATCCTCATGGTATAGCATACT
TTCATATACCTACTGGCTATTTCTGGACCTTCTCTTGTGAAGAGCCTGTT
TACTTATTATGCATTCTTCAGTTATGTTTTTTACTTACTTGTTAATTGGT
TCTTGAGTTTTCCCATTCCTGGTGTTTTATATAACAACTCCCAATATGAT
GTGCAGTTTGCAAATATTTTTTTTCTTTTTGAGAGTTTTCTCTCTACACT
GCTAATTGTTATATACAGAAGCACTTTAGTTTGACATAATCCTATTTGTC
TCTATTTGCATTTGCTTTGAAGATTTGTACAAAAAACCCTTCCAATGTCC
TACAGTATTTCCCATAGATCTTTTTTAATAGTT

Query= MSMg01no333_o11.g1 MSMg01no333_o11.g1 CHROMAT_FILE:
MSMg01no333_o11.g1 PHD_FILE: MSMg01no333_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:10 2005
         (660 letters)



>mm_chr4_29349377_29350436
          Length = 1060

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctgtaccccattatttaatacagttatttgattttctggagtccaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttgtttagctctgtaccccattatttaatacagttatttgattttctggagtccaactt 589

                                                                       
Query: 61  ctaaagttctttgtacatattggatattagtcctctatcacatttaggattggtaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctaaagttctttgtacatattggatattagtcctctatcacatttaggattggtaaagat 529

                                                                       
Query: 121 cctttcccatgctctcatgtgaggactgatctctgagagacccaggatacaagatagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cctttcccatgctctcatgtgaggactgatctctgagagacccaggatacaagatagtgc 469

                                                                       
Query: 181 tctcccctgagtcccagttgtaatggcaatgaagcaaaatgatgacaagaacttcaatgt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tctcccctgagtcccagttgtgatggcaatgaagcaaaatgatgacaagaacttcaatgt 409

                                                                       
Query: 241 atctcccaagttgcaatataggcatttgtatcttgtgattaacatgtagcccaataaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atctcccaagttgcaatataggcatttgtatcttgtgattaacatgtagcccaataaata 349

                                                                       
Query: 301 gacttaatcctcatggtatagcatactttcatatacctactggctatttctggaccttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 gacttaatcctcatggtatagcatactttcatatacctactggctatttctggaccttct 289

                                                                       
Query: 361 cttgtgaagagcctgtttacttattatgcattcttcagttatgttttttacttacttgtt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 288 cttgtgaagagcctgtttacttattatgcattcttcagttatgttttttatttacttgtt 229

                                                                       
Query: 421 aattggttcttgagttttcccattcctggtgttttatataacaactcccaatatgatgtg 480
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 228 aattggttcttgagttttcctattcctggtgttttatataacaactcccaatgtgatgtg 169

                                                                       
Query: 481 cagtttgcaaatattttttttctttttgagagttttctctctacactgctaattgttata 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 168 cagtttgcaaatattttttttctttttgagaattttctctctacactgctaattgttata 109

                                                                       
Query: 541 tacagaagcactttagtttgacataatcctatttgtctctatttgcatttgctttgaaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tacagaagcactttagtttgacataatcctatttgtctctatttgcatttgctttgaaga 49

                                                           
Query: 601 tttgtacaaaaaacccttccaatgtcctacagtatttcccatagatct 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tttgtacaaaaaacccttccaatgtcctacagtatttcccatagatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)