Query= MSMg01no333_p20.b1 MSMg01no333_p20.b1 CHROMAT_FILE:
MSMg01no333_p20.b1 PHD_FILE: MSMg01no333_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:16 2005
(557 letters)
>mm_chr4_85694479_85695429
Length = 951
Score = 857 bits (443), Expect = 0.0
Identities = 529/567 (93%), Gaps = 24/567 (4%)
Strand = Plus / Plus
Query: 1 acttttgctgtcggctggtgtcagggattttaaccatgtgcctacagtgtgcagtgccca 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acttttgctgttggctggtgtcagggattttaaccatgtgcctacagtgtgcagtgccca 258
Query: 61 gacatcgttttggtagacttgagaggggtataggttcctcaaatgaagagacagagcaga 120
||||||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 259 gacatcggtttggtagacttgagaggggtgtaggtttctcaaatgaagagactgagcaga 318
Query: 121 gcaaatcttagttcctcc-ataagtaac-gaaattagaaggatattgtggagcaagaact 178
||| ||||||||||| || | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 319 gcagatcttagttcc-cctagaagtaacagaaattagaaggatattgtggagcaagaact 377
Query: 179 tgaaaacatgcccactaagtaacctggtattgggcatggcaggggagtcaaaacatgttc 238
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 378 tgaaaatatgcccactaagtaacctggt-gtgggcatggcaggggagtcaaaacatgttc 436
Query: 239 tcacccccctgccgtcattttctttccccttggattgctgtttttttttttttaataact 298
|||||||||||||||| |||||||| |||||||||||| |||||||| |||||||
Sbjct: 437 tcacccccctgccgtcgttttcttttcccttggattgc------ttttttttaaataact 490
Query: 299 gcaagactttgtatattccatattcactacctatctgggccctcctcactaagtcctcag 358
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcaagactctgtatattccatattcactacctatctgggccctcctcactaagtcctcag 550
Query: 359 accagccatgagccctcagactctgaactcctctaccccacatagagacctcgaagatca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 accagccatgagccctcagactctgaactcctctaccccacatagagacctcgaagatca 610
Query: 419 gtggttgtagataaaga------g--ctcaggaggtagccttttccccttgctaggtgtg 470
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct: 611 gtggttgtagataaagactttatgaactcaggaggtagcctttcccccttgctaggtgtg 670
Query: 471 tgagctcatcttctgcaaaagaggatgtatcagcattcttataaagaacagagtttgctc 530
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 671 tgagctcatct---gcaa--gag-atgtatcagcattcttataaagaacagagtttgctc 724
Query: 531 ttgtccacttaaataaaatatgatgtt 557
|||||||||||||||||||||||||||
Sbjct: 725 ttgtccacttaaataaaatatgatgtt 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 951
Length adjustment: 10
Effective length of query: 547
Effective length of database: 941
Effective search space: 514727
Effective search space used: 514727
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_p20.g1 MSMg01no333_p20.g1 CHROMAT_FILE:
MSMg01no333_p20.g1 PHD_FILE: MSMg01no333_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:17 2005
(563 letters)
>mm_chr4_85855994_85856953
Length = 960
Score = 953 bits (493), Expect = 0.0
Identities = 545/563 (96%), Gaps = 3/563 (0%)
Strand = Plus / Minus
Query: 1 aaaataaaaataaaccttaaaaaaacaattggaggtggattgcatccaccctgatgctgt 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aaaataaaaataaacctt-aaaaaacaattggaggtggattgcatccaccctgatgctgc 702
Query: 61 tacagacattatcacttgaaactccacctgtgataatgtttgctgccgatcgttcactta 120
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 701 tgcagacattatcacttgaaactccacccgtgataatgtttgctgccgatcgttcactta 642
Query: 121 gactatctactacttcagccatggctggtgacgtgaacaaagaggattttatgatgaact 180
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gactatctactgcttcagccgtggctggtgacgtgaacaaagaggattttatgatgaact 582
Query: 181 gggatctccagaagcatggtgactaaagccagaccaagtggatggaaaagcaggaacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gggatctccagaagcatggtgactaaagccagaccaagtggatggaaaagcaggaacaaa 522
Query: 241 ggactaaaaacggcaagagcagctttaagagtcgttacacccagaaatcatctgtgactg 300
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 521 ggactaaaaacggcaagagcagctttaagagccgttacacccggaaatcatctgtgactg 462
Query: 301 ttcattcttatatgtccaacattagacaccgtcatatacctggataattacccttaaata 360
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 461 ttcactcttatatgtccaacattagacaccgtcacatacctggataattaggtttaaata 402
Query: 361 aaagattcccagtgaaggttaattcagatactgagcctctgaagttatctaatgagtctc 420
|||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 401 aaagatgcccagtgaagg--aattcagatagtgagcctctgaagttatctaatgagtctc 344
Query: 421 actcagttatgcttataaaataaggtgacatcgaatactgccgtgcccagatataaataa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 actcagttatgcttataaaataaggtgacatcgaatactgccgtgcccagatataaataa 284
Query: 481 cagatatacatacaactatgttgcttggaacactgtaggtcatgaatacatttattttcc 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 283 cagatatacatacaactatgttgcttggaacaccgtaggtcatgaatacatttattttcc 224
Query: 541 tccctttagtccaagactccata 563
|||||||||||||||||||||||
Sbjct: 223 tccctttagtccaagactccata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 960
Length adjustment: 10
Effective length of query: 553
Effective length of database: 950
Effective search space: 525350
Effective search space used: 525350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
