BAC Information

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BAC

Clone NameMSMg01-334C12
Chromosome4 (Build37)
Map Location 104,853,804 - 104,854,331
singlet/doubletsinglet
Overlap genePpap2b
Upstream geneDab1, C8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513
Downstream geneLOC433742, LOC665518, LOC434381, Ppia-ps4_954.1, Map1lc3, LOC384039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C12.T7 (MSMg01no334_c12.b1)MSMg01-334C12.TJ (MSMg01no334_c12.g1)
ACCAG449723AG449724
length717711
length of high quality
(start - end)
533 (36 - 568)245 (55 - 299)
definitionCHROMAT_FILE: MSMg01no334_c12.b1 PHD_FILE: MSMg01no334_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:30 2005CHROMAT_FILE: MSMg01no334_c12.g1 PHD_FILE: MSMg01no334_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTGCAAAAAGGACCGCGGAATTCTCTGG
TTTTCAAGCATCCTCAGCTGCAAAACAGGTCCTGCCGTCTTGAAAGGCTA
CAGTGGGGATTTCCTGAGGAGCGGAACTTTGCAGCCAGCCACAGAGCAGG
TGTGCTGCTGGGGCTTCTTCCTTCCCCTCCCCTGGAAGCACAAAAGGGAA
GGGGGGCGATGCCTAGGAAGGGGGTAGCTCCGTGAGAAATAATCCACTGC
CCGCCCGCCCGCTGGTGCCGCCCGAGAACAAGCTGCATCTGGGGCCAGCC
CGCAGCTTGTCCATCAAAATGACAGAATGGGTCTCAGGGAATTAATTATT
CAACAAGCTCGCCCTTCACAAATCCCGTCCAAAGGAATGGTTTGATTCCT
TTCAGTACACTGACTATACAAAATACTGAGAGTCCAGTCCACTTCAAAAA
CCTCACAGAAACCCAGGCCTGGCCTTGGTAGGCGTTCCTCGGCCACTGGG
TTTTTCTGTGTGTGGTTTATAATAACATGCAAGCCTGATGCCAAGTCCTA
ATCTATTAAGGGACTGCCAATTATCAGGGGGCTTACAGAACTGGGGAGCG
GGCCTAATTAGGCTTGCAGACCATTTCTCCCCATTGCCTCTCACAATCTG
ACACAAGCTAAACTGGTCAATTGATTTAAATCGACCCCCCCTGAATTCCT
GCGCACACTGTCTTGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGCA
GAATTCAGAGGTAGATTTTCTAAGCAGAAAGTAATTCATCAGAAGCTATT
AGAACCCAGTTTTAATCAGTTAGTTTGGAAAAGAGTTTTGAGCCAGAACA
GCTGAGTTGAACCAGCCAGTCTGAGTTCAGAAAGAACTAGAAAGGATGAG
TTTATTCAGCACTAAGCCTCTGAGACAAGTATATCTGGTGAATGAAAGTT
ACTTTTACATATATGCATGCATGTAAATACCACAAATTAGGGTCCACATG
TTTTAGAACATAGGTTTTGTCACCTAATTTAATATTATACTTTCCAGACC
TATCCATTTTCCCACAAATTTCATTTTTATTTATAGCTAAAATTTCATTG
TATATATGTACCACATTTTAGAAAAGAACTGTATTTATTTATTTATTTAT
TTATTTATTTACTTATTTATTTATTTACGTGAATGTGTCTGTGTGTGAGC
ATGTACATGTAAGTGCAGGTAACCTCAAAGACCAGAGGTGTTGGCCCCCT
GGAGCTGAAGTTACATGAACGTGTGAGCTGGGAACTGCACTGGGTTCTTT
GTCAGGGTTTTTAGCCGCTCCTCCTTTCCCCTTGCCTTATTCTGATTATC
CACTCTTCCGCTCTTAGACACCCATGGCGCCCCAACTCCTTGCCCTTGTG
AATACTGGAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c12.b1 MSMg01no334_c12.b1 CHROMAT_FILE:
MSMg01no334_c12.b1 PHD_FILE: MSMg01no334_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:30 2005
         (533 letters)



>mm_chr4_104853584_104854515
          Length = 932

 Score =  948 bits (490), Expect = 0.0
 Identities = 520/532 (97%), Gaps = 7/532 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgg--ttttc-aagcatcctcagctgcaaaacaggtcctgccgtcttgaaag 61
           |||||||||||     || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gaattctctggac---tcaaagcatcctcagctgcaaaacaggtcctgccgtcttgaaag 692

                                                                       
Query: 62  gctacagtggggatttcctgaggagcggaactttgcagccagccacagagcaggtgtgct 121
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct: 691 gctacagtggggatttcctgaggagcggaacttagcagccagccacagagcaggtgcgtt 632

                                                                       
Query: 122 gctggggcttcttccttcccctcccctggaagcacaaaagggaaggggggcgatgcctag 181
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 631 gctggggcttcttccttcccctcccctggaagcac-aaagggaaggggggcgatgcctag 573

                                                                       
Query: 182 gaagggggtagctccgtgagaaataatccactgcccgcccgcccgctggtgccgcccgag 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 572 gaagggggtagctccgtgagaaataatccactgcccgcccgcccgctggtgccgcccgcg 513

                                                                       
Query: 242 aacaagctgcatctggggccagcccgcagcttgtccatcaaaatgacagaatgggtctca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aacaagctgcatctggggccagcccgcagcttgtccatcaaaatgacagaatgggtctca 453

                                                                       
Query: 302 gggaattaattattcaacaagctcgcccttcacaaatcccgtccaaaggaatggtttgat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gggaattaattattcaacaagctcgcccttcacaaatcccgtccaaaggaatggtttgat 393

                                                                       
Query: 362 tcctttcagtacactgactatacaaaatactgagagtccagtccacttcaaaaacctcac 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcctttcagtacactgactatacaaaatactgagagtccagtccacttcaaaaacctcac 333

                                                                       
Query: 422 agaaacccaggcctggccttggtaggcgttcctcggccactgggtttttctgtgtgtggt 481
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaaacccaggcctggccttggcaggcgttcctcggccactgggtttttctgtgtgtggt 273

                                                               
Query: 482 ttataataacatgcaagcctgatgccaagtcctaatctattaagggactgcc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttataataacatgcaagcctgatgccaagtcctaatctattaagggactgcc 221


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space:   482206
Effective search space used:   482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)