BAC Information

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BAC

Clone NameMSMg01-334C18
Chromosome4 (Build37)
Map Location 69,704,062 - 69,704,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497
Downstream geneLOC671064, Cdk5rap2, Megf9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334C18.T7 (MSMg01no334_c18.b1)MSMg01-334C18.TJ (MSMg01no334_c18.g1)
ACCAG449735AG449736
length732734
length of high quality
(start - end)
660 (73 - 732)561 (75 - 635)
definitionCHROMAT_FILE: MSMg01no334_c18.b1 PHD_FILE: MSMg01no334_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:31 2005CHROMAT_FILE: MSMg01no334_c18.g1 PHD_FILE: MSMg01no334_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATGCATGTTTCAAAAGCGTGAACTTTCCAGATATGCAGCTGTTTC
CATCAAGGAGACAGGGAAGGCATGAACATTTGGCTAAAAATTTGGTAAAA
GTTTTTCTCCATGTGAGAAAATTGTTGGAGATGAAAAACACAAAGCAAAA
CAGAAACAAACAAACAACAACGAGAGAACTAAGGATACCAATGCACTCCC
TCAGATATGATGTTCCTTAATAGTTATAAATGTAGGGAAACACTTATTTA
CTCTCAGTTCTAAATGTCAAATTTAGAGAAAAAAATACCAACAGTATTCA
GGTAAGTGTTGCCTCAATGTCTCCTGAATTGGAGCACACTCTTTGGAAGG
TGGTACAAATATTTCTCTACTTCCTATATCTTCTCTGTAGTCACCTTTGA
GCATTTATTTAGACAAATACATATGATTTTGTTATGTTACTTCCTTTATC
TTTATAGGACATTGCATTGATTTTCAAAAAAACTATATAGGTAGGTTATT
CTATCTATGGATTTTATTTCATCATATTAAAGAGGCTGTTACAAAATAAT
TGCTGTGGAAAGATCTGGGGCTGGAAGGCTAATAGAGTCTCTTGTCTCTC
CTCTGAATCATACCTCTGGTTTGTTAATATCATTCTGATTCACCTCTGGA
TAAAAGCACTTGTGGCTTTTTTTCTTCTTGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCAGAAATATCTTTTGTGATTGGGTTAACTCACTCA
GGATGATGCCCTTCAGGTCCATCCATTTGCCAAGGAATTTCATAAATCCA
TTCTTTTTGATAGTTGAGTAGTACTCCATTGTGTAAATGTGACACATTTT
CTGTATCCATTCCCCTATTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGG
CTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTA
CCAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGATACTGCGGGATC
CTCCAGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCC
AGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCT
CTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAAGTTTTGATCTT
AGCCATTCTGACTGGAGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCA
TTTCCCTGATGATTAAGGATGCTGAACATCTTTTCAGGTGCTTCTCAGCC
ATTCGGTATTCCTCAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTAT
ATATATATTGCATATTAGTCCCCTATCTGATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_c18.b1 MSMg01no334_c18.b1 CHROMAT_FILE:
MSMg01no334_c18.b1 PHD_FILE: MSMg01no334_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:31 2005
         (660 letters)



>mm_chr4_69704062_69705120
          Length = 1059

 Score =  946 bits (489), Expect = 0.0
 Identities = 519/529 (98%), Gaps = 1/529 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgaactttccagatatgcagctgtttccatcaaggagacagggaaggcatgaacatttgg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tgaactttccagatatgcagctgtttccatcaaggagacagggaaggcatgaacatttgg 469

                                                                       
Query: 62  ctaaaaatttggtaaaagtttttctccatgtgagaaaattgttggagatgaaaaacacaa 121
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 468 ctaaaaaattggtaaaagtttttctccatgtgagaaaattgctggagatgaaaaacacaa 409

                                                                       
Query: 122 agcaaaacagaaacaaacaaacaacaacgagagaactaaggataccaatgcactccctca 181
           |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 408 agcaaaacaggaacaaacaaacaacaatgagagaactaaggataccaatgcactccctca 349

                                                                       
Query: 182 gatatgatgttccttaatagttataaatgtagggaaacacttatttactctcagttctaa 241
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggtatgatgttccttaatagttataaatgtagggaaacacttatttactctcagttctaa 289

                                                                       
Query: 242 atgtcaaatttagagaaaaaaataccaacagtattcaggtaagtgttgcctcaatgtctc 301
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgtcaaatttagag-aaaaaataccaacagtattcaggtaagtgttgcctcaatgtctc 230

                                                                       
Query: 302 ctgaattggagcacactctttggaaggtggtacaaatatttctctacttcctatatcttc 361
           ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 229 ctgaattggagcatactctttggaaggtgatacaaatatttctctacttcctatatcttc 170

                                                                       
Query: 362 tctgtagtcacctttgagcatttatttagacaaatacatatgattttgttatgttacttc 421
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 169 tctgtagtcacctttgagcatttatttagccaaatacatatgattttgttatgttacttc 110

                                                                       
Query: 422 ctttatctttataggacattgcattgattttcaaaaaaactatataggtaggttattcta 481
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 109 ctttatctttataggacattgcattgattttcaaaaaaactatgtaggtaggttattcta 50

                                                            
Query: 482 tctatggattttatttcatcatattaaagaggctgttacaaaataattg 530
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  tctatggattttatttcatcatattaaagaggctgttacaaaataattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1059
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1049
Effective search space:   681850
Effective search space used:   681850
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)