Query= MSMg01no334_c19.b1 MSMg01no334_c19.b1 CHROMAT_FILE:
MSMg01no334_c19.b1 PHD_FILE: MSMg01no334_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:31 2005
(642 letters)
>mm_chr4_38346099_38347140
Length = 1042
Score = 542 bits (280), Expect = e-158
Identities = 340/372 (91%), Gaps = 22/372 (5%)
Strand = Plus / Minus
Query: 272 tatattctgtattaaatatactatacatatattaaagtaaaaaaattttgatgcatacct 331
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1042 tatattctgtattaaatatactatacatatattaaagtaaaaacattttgatgcatacct 983
Query: 332 tttttttcagtatgtgggaggcagaggctg-gcaaatttctgtgagttcatgccagtcta 390
||||| |||||||||||| |||||| ||| | |||||||||||||||||||||||||||
Sbjct: 982 tttttcgcagtatgtgggaagcagagactgag-aaatttctgtgagttcatgccagtcta 924
Query: 391 gaacattcagagttagttacactgagaaaccctgtctcataaaaccaaaaccaaaatcaa 450
| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 ggacagtcagaattagttacactgagaaaccctgtctcataaaaccaaaaccaaaatcaa 864
Query: 451 agcaataaataaataaataaatgaataaataaataaattagttaattaattaaactaaag 510
|||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 863 agcaataaataaataaat---------------taa-----ttaattaattaaactaaag 824
Query: 511 aatcagcagtagtctttatgatgaaatttatttgcttattctaaaaccaatctttctgta 570
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 aatcagcagtagtctttgtgatgaaatttatttgcttattctaaaaccaatctttctgta 764
Query: 571 cttctttacttttgtgataaagtggattaataggattaaatattgtttgtagtttatcta 630
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 763 cttctttacttttgtgataaagtggattaataggattaaatagtgtttgtagtttatcta 704
Query: 631 atataatcttga 642
||||||||||||
Sbjct: 703 atataatcttga 692
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_c19.g1 MSMg01no334_c19.g1 CHROMAT_FILE:
MSMg01no334_c19.g1 PHD_FILE: MSMg01no334_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:31 2005
(651 letters)
>mm_chr4_38169389_38170440
Length = 1052
Score = 1110 bits (574), Expect = 0.0
Identities = 636/658 (96%), Gaps = 8/658 (1%)
Strand = Plus / Plus
Query: 1 aggtatccacagagttgaacagaaggcaacgtgttccctagaactgggaatacaggtggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aggtatccacagagttgaacagaaggcaacgtgttccctagaactgggaatacaggtggt 258
Query: 61 catgagctccttgtaaagttgctggatttgtatatgggtagtgtgg-aaaaacag-tatc 118
||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 259 catgagctccttgtaaatttgctggatttgtatatgggtagtgtggaaaaaacagat-tc 317
Query: 119 tgttcccagctgtagaactatctttactgcccagtagcagaataca-tttaaaataaaaa 177
|||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 318 tgttcccaactgtagaactatctttactgcccagtagcagaatgcattttaaaataaaaa 377
Query: 178 gttaaaagtacactttattagaaatagatgttctttgtcatagtgtaaatactaaagaga 237
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttaaaagtatacttcattagaaatagatgttctttgtcatagtgtaaatactaaagaga 437
Query: 238 gatctggagggcctgggggtgaggagtaactggaaagagtagaatcagggaaaactatca 297
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 438 gatctggagggggtgggggtgaggaggaactggaaagagtagaatcagggaaaactataa 497
Query: 298 tcagaatatgttttatgagaaaaatattttaattaaagagtatatgaatttcacaacaat 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcaaaatatgttttatgagaaaaatattttaattaaagagtatatgaatttcacaacaat 557
Query: 358 ataaagtaaacattgccaataattagtaacatcttcctgattctatttatctcatttctg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ataaagtaaacattgccaataattagtaacatcttcctgattctatttatctcatttctg 617
Query: 418 tcatccacctcccttctct-ccctcattcccttggtgtgaatctgtgtctaatctttttc 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcatccacctcccttctcttccctcattcccttggtgtgaatctgtgtctaatctttttc 677
Query: 477 tattttgagacaccagatttctatgttagcatagaatgagctttggaaggtcctaatttc 536
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 678 tattttgagacaccagatttctatgttagcataggatgagctttggaaggtcctaatttc 737
Query: 537 acctcctcgtgattttacatccttagtaaaagaacataggcatttaaaaacatatattgt 596
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 738 acctcctcatgattttacatccttagtaaaagaacataggcatttaaagacatatattgt 797
Query: 597 tattttttt---aaattaacaaatttaaaagtgcactaaaatgcaactctatcttttc 651
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 798 tatttttttcttaaattaacaaatttaaaagtgtactaaaatgcaactctatcttttc 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1052
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1042
Effective search space: 667922
Effective search space used: 667922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
