BAC Information

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BAC

Clone NameMSMg01-334E02
Chromosome4 (Build37)
Map Location 139,708,985 - 139,902,725
singlet/doubletdoublet
Overlap geneIgsf21, LOC100040728
Upstream gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a
Downstream geneArhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334E02.T7 (MSMg01no334_e02.b1)MSMg01-334E02.TJ (MSMg01no334_e02.g1)
ACCAG449797AG449798
length728832
length of high quality
(start - end)
410 (45 - 454)174 (76 - 249)
definitionCHROMAT_FILE: MSMg01no334_e02.b1 PHD_FILE: MSMg01no334_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:37 2005CHROMAT_FILE: MSMg01no334_e02.g1 PHD_FILE: MSMg01no334_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,708,985 - 139,709,390)(139,902,552 - 139,902,725)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAAGAGGACCGCGGA
ATTCACCATATTACTTGCCTCTCGGCGACAACATGAAATTGAAGTGTGAA
GCCCTTGACCCTGTCCTCGACTCCCAGGAATGTCACACTAATGTCAGCCA
CTCAGGTTGGCATTCATCTTATTTCTGAACACGACCCCGGTGGACAGGAA
GGACAAAGTGAAGTCTAATGTGTAACATTCCCCTGGAGCTCTCTTCCTTG
AGCCCTAAGGTAGATAGGATGTCGGAATGCCTGCCCCTGCTGGCCATGTA
TGGAACTGCACTGCTATCCTATTAACTACTGTTGGTTGCTGAGAAAAGAA
AAAAGAATTGTGTACCAGCGCTTGCAGACAGAGACTGGGGAACTCCAGTC
TAGACGATGAACCCATGCCATAGTAGAAAAGTCCCTTGTAGGAGGATATA
AGGCGTCATTAGATCACACTTCACTTTGACAGAGATCACTATACTCAAGA
CCCCAGTCCTGACTAGTCCCTTACCTCTATGTTTTTCATAGCCACTTTAT
TACCTTTTAACATTTTTCTTTCTTCTCACACTTCCTCTACCACTTTCTTC
CTTATTTGCCCACTCACCATTCCTTCCCCCTTATTCTATTACTTTCTCTC
CATTCGTCCTACCTTCCCCTTTCTCTTCTCCTTATTATTTCATAACAACC
TCTCTTTTTTTCACCTTCTTCTCCTTCG
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCAGGATCGCTTCATCTCTGCCCAC
TCCGTGTTAGGGACCAAAAGTGTGCAGCCACACTCAGCACTTTCAATGAT
GTTGAGTAGTGAATCTTAGGTCTTCGTGTTTGTGTGGATCATCTACCTGG
CCTCTGAAGTCTACTTTTGAACCCCAGATTAAGAACCAATCGGTAGGCTC
CAGTGCACTCATGGGCATACATAGATGTATACACATATGTTACGTTCTTG
CACCGAGCATACACACCACTTTTTTTTACACCACTGCATTTTCCCACTTC
TTTAGATATTTCCTATTTTCCCCTTCCGCCCCCATCCATAGTTTTTTTAT
TTTTTTTCCGCTCCTTTTTATTTTATTCCCCTCCCATTTTTCTGTCTTAT
TTTCTAATCCTTATTTCTCCCCTTTTCTTATTTTTCTCTCCCTCTATTCT
CCTTTTATACCTCCTCCTTCCCCCGTTTCTCTCCTATCCTATTTTTTTCT
ACTTTTCCTCCCCTATTATTTCTTCTTCTTTCTTTCTTCTTCAACCCCAG
CTATTATTCTTATCCTTCCTCCACTTCCTCTCTATTTTTCTTCCTTCTTA
TTAACCCCTCTCTCTTTCTTTCTCTCTCCCCCTTTTTTTTCTTTCCTCCC
CCCTCCCTTATTTTTCCTTTTTTCTATCCCCTTAATATACCTTCTTCTAT
TCTATTCCCCTCCTCTTATTTACCCCGCTCTTTTTACCCCCTTTATTCTC
TCTCCTTCCCATTATTTTCCCTTCTCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_e02.b1 MSMg01no334_e02.b1 CHROMAT_FILE:
MSMg01no334_e02.b1 PHD_FILE: MSMg01no334_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:37 2005
         (410 letters)



>mm_chr4_139708781_139709590
          Length = 810

 Score =  746 bits (386), Expect = 0.0
 Identities = 401/406 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccatattacttgcctctcggcgacaacatgaaattgaagtgtgaagcccttga 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccatattatttgcctctcggcgacaacatgaaattgaagtgtgaagcccttga 264

                                                                       
Query: 65  ccctgtcctcgactcccaggaatgtcacactaatgtcagccactcaggttggcattcatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccctgtcctcgactcccaggaatgtcacactaatgtcagccactcaggttggcattcatc 324

                                                                       
Query: 125 ttatttctgaacacgaccccggtggacaggaaggacaaagtgaagtctaatgtgtaacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatttctgaacacgaccccggtggacaggaaggacaaagtgaagtctaatgtgtaacat 384

                                                                       
Query: 185 tcccctggagctctcttccttgagccctaaggtagataggatgtcggaatgcctgcccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccctggagctctcttccttgagccctaaggtagataggatgtcggaatgcctgcccct 444

                                                                       
Query: 245 gctggccatgtatggaactgcactgctatcctattaactactgttggttgctgagaaaag 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 gctggccatgtatggaactgcactgctaccctattaactactgttggttgctgagaaaag 504

                                                                       
Query: 305 aaaaaagaattgtgtaccagcgcttgcagacagagactggggaactccagtctagacgat 364
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaaagaattgtgtaccagggcttgcagacagagactggggaactccagtctagacgat 564

                                                         
Query: 365 gaacccatgccatagtagaaaagtcccttgtaggaggatataaggc 410
           ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 565 gaacccatgccatagcagaaaagtcccttggaggaggatataaggc 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no334_e02.g1 MSMg01no334_e02.g1 CHROMAT_FILE:
MSMg01no334_e02.g1 PHD_FILE: MSMg01no334_e02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:37 2005
         (174 letters)



>mm_chr4_139902352_139902925
          Length = 574

 Score =  329 bits (170), Expect = 7e-95
 Identities = 173/174 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaggatcgcttcatctctgcccactccgtgttagggaccaaaagtgtgcagccacactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccaggatcgcttcatctctgcccactccgtgttagggaccaaaagtgtgcagccacactc 315

                                                                       
Query: 61  agcactttcaatgatgttgagtagtgaatcttaggtcttcgtgtttgtgtggatcatcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 314 agcactttcaatgatgttgagtagtgaatcttaggtcttcgtgtttgtgtggaccatcta 255

                                                                 
Query: 121 cctggcctctgaagtctacttttgaaccccagattaagaaccaatcggtaggct 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cctggcctctgaagtctacttttgaaccccagattaagaaccaatcggtaggct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)