BAC Information

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BAC

Clone NameMSMg01-334E17
Chromosome4 (Build37)
Map Location 138,735,688 - 138,736,160
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4
Downstream gene9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334E17.T7 (MSMg01no334_e17.b1)MSMg01-334E17.TJ (MSMg01no334_e17.g1)
ACCAG449826AG449827
length744895
length of high quality
(start - end)
473 (77 - 549)79 (128 - 206)
definitionCHROMAT_FILE: MSMg01no334_e17.b1 PHD_FILE: MSMg01no334_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:40 2005CHROMAT_FILE: MSMg01no334_e17.g1 PHD_FILE: MSMg01no334_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGATCAGCGGA
ATTCCTGTCCAGTTTCCCAAAAAGGCCAGTCAGCCAGCCACTCTGGGTTG
GACTGGACTATATAACATACCCAACGCCAATTCTCACCTTGGGCTTGGGA
TAAGCAGCCCCTGTCTTTCCAGATCATATTCTGCAACACGCCCTCAAAAG
CTGGGCTTGGAGCCGCCGCCTGTTGTGTGTTCCCATGGAAACCATGCACT
TTGTACACCTTATCTCTTCCTTTGCTCTTAGTGTTTGTCCGGCTGCTCTG
TAGCTCTTTGAGATAGGTAGGGTCTGTTAGTCACTCCCTAACCATTAGAC
CCTGAGATACAATCTCTTGCCACAAATGGAGCCTGTCAAATGATGACCCA
GAAAAACTCCAGTCATCCAGGACGTAAACTGCGGTCGGTTCCAACTCCTC
CCATCCCTCCTTCAGATTAGACACTGTCATGGTCCCGGTGAAAGGCCAGA
TGCTGACCTTACCCAAGATCTTCTGAAGGGAAGGAACTGAACTGAGAGCA
TAGTCTGGTGCAAGGCTGAGATACACGGGGAGGGACCCATGGTCCCAGCT
GCTGGAGGCTGAAGCTGGAGGATCACTAAAGTGCTCGAGTTCAAGGCCAG
CCTGGGCAGCATATTAAGATGCTATCTGTGCAAAACAGAATATAGACCAT
CAACTATCACACAATCCTAATGAGGTTTAGGTAGCTAAGTGCAA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAAGCCAGTCAGCTTCTATCTTTTAAAAA
AAGACCTCAAGTTTGAGGGCAGACGCAAGCAATTTAGTGGACTCTGCCTT
GTGTGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTCTTTCTTCTCATTCCCTTTTTTTTCTTTTTTTTTTTTTTTTCTT
TTTTTTTTTTTTTTCCTTTTTCCTTCACACACATTACTAAATGTTTCTTC
TTTTCTCTTACCAACCCTACTTTTTTTTTTTTTTTCNCCCCTCTTTCCTA
TTCTTCTTTGATTTGTTTCCTTTTTTTTCTTTTTCCTCCCCCCCCTCTCT
TTTTTTTTGTTATTGTTATTGTGTTTCTTTTCTTTTTTTTTCTCTCTTCC
TTTCTTTTTTCCTACTATATATTCTTTGATCTCTCCTCTCTATTTTTTTT
CCTTTTTCTATTCTCTCTCCTTTTTACTTTTCCCTTCTCTTTTTTTTCTC
GCTTTTTTTTTATTTTCCCTTTTTCTTATCTTCTTTCTTGTCTTTCCTTT
TCTCTTCTATTTATTAGTTCTTTAATCCTTATATTTCATTTCTTTTTCTT
TCTTCCTCTTTCTGTCTCCTCTATTTCCCTTTTTATTTTTTCTCTTTTTC
CTCCTCACCCTTTGCCCCTCCTTTTTCTTTTCTTTTCCTTCACCTCCTTT
TCTTTTTTATTTTCTATCCTTCTATATCTTACATCTATTTTTTCCATCTC
TTCCCTTTTTTTCTCTTATTTTTCCTCTTATCATATTCCCCTTTCCCTTT
ATACTTGTTTTTGTCTTCTTTTTTCTCCCTTCCTCCCTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_e17.b1 MSMg01no334_e17.b1 CHROMAT_FILE:
MSMg01no334_e17.b1 PHD_FILE: MSMg01no334_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:40 2005
         (473 letters)



>mm_chr4_138735488_138736360
          Length = 873

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtcagccagccactctgggttggactggactatataacatacccaacgccaattctca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 673 cagtcagccagccactctgggttggactggactatataacatacccaaggccaattctca 614

                                                                       
Query: 61  ccttgggcttgggataagcagcccctgtctttccagatcatattctgcaacacgccctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccttgggcttgggataagcagcccctgtctttccagatcatattctgcaacacgccctca 554

                                                                       
Query: 121 aaagctgggcttggagccgccgcctgttgtgtgttcccatggaaaccatgcactttgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaagctgggcttggagccgccgcctgttgtgtgttcccatggaaaccatgcactttgtac 494

                                                                       
Query: 181 accttatctcttcctttgctcttagtgtttgtccggctgctctgtagctctttgagatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 accttatctcttcctttgctcttagtgtttgtccggctgctctgtagctctttgagatag 434

                                                                       
Query: 241 gtagggtctgttagtcactccctaaccattagaccctgagatacaatctcttgccacaaa 300
           |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtagggcctgtgagtcactccctaaccattagaccctgagatacaatctcttgccacaaa 374

                                                                       
Query: 301 tggagcctgtcaaatgatgacccagaaaaactccagtcatccaggacgtaaactgcggtc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tggagcctgtcaaatgatgacccagaaaaactccagtcatccaggacgtaaactgcggtc 314

                                                                       
Query: 361 ggttccaactcctcccatccctccttcagattagacactgtcatggtcccggtgaaaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggttccaactcctcccatccctccttcagattagacactgtcatggtcccggtgaaaggc 254

                                                                
Query: 421 cagatgctgaccttacccaagatcttctgaagggaaggaactgaactgagagc 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cagatgctgaccttacccaagatcttctgaagggaaggaactgaactgagagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)