BAC Information

Click to search

BAC

Clone NameMSMg01-334G15
Chromosome4 (Build37)
Map Location 113,210,260 - 113,210,846
singlet/doubletsinglet
Overlap geneLOC242627
Upstream geneLOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
Downstream geneLOC100040625, A630098G03Rik, LOC666048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334G15.T7 (MSMg01no334_g15.b1)MSMg01-334G15.TJ (MSMg01no334_g15.g1)
ACCAG449917AG449918
length717697
length of high quality
(start - end)
491 (71 - 561)571 (57 - 627)
definitionCHROMAT_FILE: MSMg01no334_g15.b1 PHD_FILE: MSMg01no334_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:50 2005CHROMAT_FILE: MSMg01no334_g15.g1 PHD_FILE: MSMg01no334_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGNGATCAGCGGAATT
CCTTTTCTGTTTCTTCAATTTTGAGTTCTGTAGGCTTCTTGTATGTCCAT
GGGCATCTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTATAATTTTATTGA
AGATATTTGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCAACTCCT
ATTATCCATAGGTTTGGTCTTCTCATTGTGTCCTGTATTTCCTGGATGTT
TTGAGTTAGGATCCTTTTGCGTTTTGTATTTTCTTTGATTGTTGTGCCGA
TGTTCTCTATGGAATCTTCTGTTTCTGAGATTCTCTCTTCTCTCTTCTAT
CTCCAGCGTTGCCTCACTTTGTGTTTTCTTTATTGTGTCTACTTCCCTTT
TTAGGTCTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGATGTGTTT
TCCTGTTTTTCTTTAAGGACTTCTACCTGTTTGGTTGTGTTTTCCTGTTT
TTCTTTAAGGACTTGTAACTCCTTAGCAGTATTCTCCTGTATTTCTTTAA
GTGAGTTATTAACGCCTTCTTGATGTCCTCTACCATCATTCTTAGATATG
CTTTTAATCCCGGTTCTAGCCTTTTCGGTTGTGTTGGGTTGCCCAGTACT
ATGTTTTTTTGTACGGTTGCATTCTTATTATGGCGACCGCTCTTTGATTT
TTGCTACCATGTATCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAG
AAAAAAAGGATGAAATTCCCATATTCATTGAGTTATTCTATTCTCACCTT
ATTTATTGCTGAGTTGAACACAACAATGTAACCATACAATGTGCTCATGC
ACAATTTTCCACTCCATGGATTACAGTCATCAAATATAATTTTCTGCCTG
TCCTCTTTATGTTGAATTATATCAAATTTTCATATCGAGAATATTGGGTA
TATTTGTGATTCCTTAAAGAAATTTTTTTGCCTTTTTAATTTTTTTTATA
ATTTTTTATTTTATATTATTTTCTTTTTTTTTCAAAACAGGGTTTCTCTG
TTCCGAGACCTCACTCTGTAGACCAGCTGTCTTCCAACTCAGTAGTCTGC
CTGCCTCTGCCAATCAAGGCCTGGGATTATAGGTGTGCACCACGACTGCC
CAGTTTAAAGATTTTTTTTCGGAGGAATCTTTATCAAAAGCTTCCAAACA
ATTATCATCCATTTTATAAAACTATTTGATTGGATAATTTTTCTATGAAT
TATTTACAGTGATTATTGCGCAAAGCATTTTCTTGCAAAAATATTGAAAT
ACAGTTAAACTATTTTACATACCCATAGAAGACATTTACCTATTATCTGT
TTTTGGAGCAAGCAGTTACAATAGAGCAAAATTTTCTTTTCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_g15.g1 MSMg01no334_g15.g1 CHROMAT_FILE:
MSMg01no334_g15.g1 PHD_FILE: MSMg01no334_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:50 2005
         (571 letters)



>mm_chr4_113210060_113211031
          Length = 972

 Score =  571 bits (295), Expect = e-167
 Identities = 509/597 (85%), Gaps = 39/597 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggatgaaattcccatattcattgagttattctattctcaccttatttattgctgagttg 60
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgaaattctcatattcattgaattattctattctcaccttatttattgctgagttg 260

                                                                       
Query: 61  aacacaacaatgtaaccatacaatgtgctcatgcacaattttccactcca-tggatt-ac 118
           |||||||| | ||||| ||||||||||| ||||||||||||||| || || ||  || ||
Sbjct: 261 aacacaaccacgtaacaatacaatgtgcccatgcacaattttcctcttcactg--ttcac 318

                                                                       
Query: 119 agtcatcaaatataattttctgcctgtcctctttatgttgaattatatcaaattttcata 178
           || | ||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||
Sbjct: 319 agacctcaaatataatattctgcatgtcctctttatattgaattatatccaattttcata 378

                                                                       
Query: 179 tcgagaatattgggtatatttgtgattccttaaagaaatttt-tttgcctttttaatttt 237
           ||||||||||| |||| ||||||||||||||||||| ||||| ||||||||     ||||
Sbjct: 379 tcgagaatatttggtacatttgtgattccttaaagatattttctttgcctt-----tttt 433

                                                                       
Query: 238 t-----tttataatt-t--tttattttatattattttctttt----tttttcaaaacagg 285
           |     || | |||| |  ||||||||||||| |||| ||||    |||||||| ||| |
Sbjct: 434 taaaaattaaaaattgtaatttattttatatttttttattttctggtttttcaagacatg 493

                                                                       
Query: 286 gtttctctgt----tccga--------gacctcactctgtagaccagctgtcttccaact 333
            |||||||||    || ||        || |||||| ||||||| ||||||| |||||||
Sbjct: 494 ttttctctgtgtagtctgactttatgggaactcactttgtagacgagctgtcctccaact 553

                                                                       
Query: 334 cagtagtctgcctgcctctgccaat--caaggcctgggattataggtgtgcaccacgact 391
           ||||||||||||||||||||||  |  ||||| |||| |||||||||| | ||||| |||
Sbjct: 554 cagtagtctgcctgcctctgcc--tcccaaggtctggtattataggtgcgtaccaccact 611

                                                                       
Query: 392 gcccagtttaaagattttttttcggaggaatctttatcaaaagcttccaaacaattatca 451
           |||||||||||||| || ||||| |||||| ||| ||| |||||||||||||| ||||||
Sbjct: 612 gcccagtttaaaga-ttattttctgaggaaacttaatccaaagcttccaaacatttatca 670

                                                                       
Query: 452 tccattttataaaactatttgattggataatttttctatgaattatttacagtgattatt 511
           ||||||  ||||||||| |||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 671 tccattacataaaactaattgattagataatttttctatgaattatttacagtggttatt 730

                                                                    
Query: 512 gcgcaaagcattttcttgcaaaaatattgaaatacagttaaactattttacataccc 568
           || ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 731 gcacaaagtattttcttgcaaaaatattgaaagagagttaaactattttacataccc 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space:   539682
Effective search space used:   539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)