BAC Information

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BAC

Clone NameMSMg01-334H18
Chromosome4 (Build37)
Map Location 59,127,989 - 59,128,485
singlet/doubletsinglet
Overlap geneAI481877
Upstream geneSvep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10
Downstream geneLOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334H18.T7 (MSMg01no334_h18.b1)MSMg01-334H18.TJ (MSMg01no334_h18.g1)
ACCAG449969AG449970
length749846
length of high quality
(start - end)
499 (130 - 628)49 (123 - 171)
definitionCHROMAT_FILE: MSMg01no334_h18.b1 PHD_FILE: MSMg01no334_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:56 2005CHROMAT_FILE: MSMg01no334_h18.g1 PHD_FILE: MSMg01no334_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAGAATGGCGC
GGAATTCCACAAGTTTGTTCATTCACACACACACACACACACACACACAC
ACACACACACACACACACACACTCACCCCGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGATTAAATAAATAAAGATGCAATAAAAGTTTTATA
AAAAGAATATTTACCTGATAACTGAAAACGGGTAGGTTATAGCCCTCTCC
TGTGGGTAATATTTTCAGATCTTTTGTTGTGTTTTCTTTTTGAGGACAGG
GTTTCTCTCCATACCCCTGATTGTCTTGGAACTCACTCTGTAGACCAGGC
TAGCCTCAAACTCAGGGATCCATCTGCTACTACCTCCTGAGTGCTTGGAT
TAAAGGCCTGTGCCACCACCACCCAGGCTATATCTTCAGGTCTTCAGATT
TCAGTATACCACATTATATAAGACACAAGGGTAAGCCACAAAAAAATGAA
GTGATAATAGCACTAGGCAAAGACCATTTCTATTAAAATATTTATTTAAT
TTAATAAGACATTATTAATACACTTTATGTAAAAACATCTGACATCTGTA
TTTGTTGAGACATTTTGGTTATTTTTGCAGGAGTAGGGATTGAGCCCACC
GTCTTGATTATGCTGGTCAAGTCCTTTACCAGTGAGCCTTCTCAGCATCC
CCCAGACATTATTTAGAGAGTACCTACTGGCCTTGAACCCTACCTCTAN
CCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAGAAATTCTCAGCATCCTGGGAGTAGTGTGGAGGTGG
TGACCCTGGTATAAGACTTGAACCAAACACTTGAAGAAAAGGAAGGTGAG
AGTTACAGGTGGAGGGTGGGGGTGGCCTCTTTCCTTTTCCTCTTTTTTTC
CTCCCTCCTCTCCCCCTTTTTTTCTCCCTCTTCTTCCTTCTCTTCTTTTT
CCTCCCCCTCTTTTCTCCTTTTTCCCTTCTTTCCTCTTCCCTCCCTCTCC
CTCACCCACCTTTTTCTCTTTTTCTACCCCCCCACCCCTTTTTCTGTTCC
CCTCTTTTTTCTTTTTTTTTCCCCCCCCCCCTCTTCCCCTTTCTTTCCCC
CCCTCCTTTTCCTTTTCCCTTTTCCCCCTTCTTCCTCCCTTCTTCCCCTT
TTCCTCTCTCCTTTCTTTTTCCCCCTCTTTCCCTCTCCCCTTTTCCCTCC
CTCCTCTTCCCCTCCCTTTCCCCTCCCCCCCTTTCCTTTTCTCTTTCTTT
CTCCTCCTCCCTTTCCCCCACTTTCCCTTTTTTCCTATTCCTTTTTTTTT
CCCCCCTTTTCCCCCTCCTCTCTTTCCCTCCCCTTTCCCCCTTTCTTCCT
TCTCCCCTCCCCCCTTCTTCCTCTTTTTTTTTCCCTTCTTTCACCCTCTT
CTCTTCCCTACCCCCTACTTCTCCCTTCTCTTTTTTTTCCCCTTTCCTCC
TTTTTTCTCCCCTTTTTCCCCCTCCCCTTTTTTCTTTCCCCCTCCCCCCC
TTCTCCCCCTCTTCCCCCTTTTCCTCCCTATCCCCCTTTTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_h18.b1 MSMg01no334_h18.b1 CHROMAT_FILE:
MSMg01no334_h18.b1 PHD_FILE: MSMg01no334_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:56 2005
         (499 letters)



>mm_chr4_59127587_59128485
          Length = 899

 Score =  758 bits (392), Expect = 0.0
 Identities = 464/500 (92%), Gaps = 24/500 (4%)
 Strand = Plus / Minus

                                                                       
Query: 21  gagagagagagagagagattaaataaataaagatg---caataaaagttttataaaaaga 77
           |||||||||| ||||| |||||||||| |||||||   ||  |||| |||||||||||||
Sbjct: 899 gagagagagaaagagatattaaataaagaaagatgggaca--aaaa-ttttataaaaaga 843

                                                                       
Query: 78  atattta-cctgataactgaaaacgggtaggttatagccctctcctgtgggtaatatttt 136
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 842 atatttaccctgataactgaaaatgggtaggttatagccctctcctgtgggtaatatttt 783

                                                                       
Query: 137 cagatc--ttttgttg---------------tgttttctttttgaggacagggtttctct 179
           ||||||  ||||||||               |||||| ||||||||||||||||||||||
Sbjct: 782 cagatcttttttgttgtgttttgttttgttttgttttgtttttgaggacagggtttctct 723

                                                                       
Query: 180 ccatacccctgattgtcttggaactcactctgtagaccaggctagcctcaaactcaggga 239
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ccatagccctgattgtcctggaactcactctgtagaccaggctagcctcaaactcaggga 663

                                                                       
Query: 240 tccatctgctactacctcctgagtgcttggattaaaggcctgtgccaccaccacccaggc 299
            ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 accacctgctactgcctcctgagtgcttggattaaaggcctgtgccaccaccacccaggc 603

                                                                       
Query: 300 tatatcttcaggtcttcagatttcagtataccacattatataagacacaagggtaagcca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tatatcttcaggtcttcagatttcagtataccacattatataagacacaagggtaagcca 543

                                                                       
Query: 360 caaaaaaatgaagtgataatagcactaggcaaagaccatttctattaaaatatttattta 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caaaaaaatgaagtgttaatagcactaggcaaagaccatttctattaaaatatttattta 483

                                                                       
Query: 420 atttaataagacattattaatacactttatgtaaaaacatctgacatctgtatttgttga 479
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 482 atttaataagacattattaatacactttatgtaaaaacatctgacatctgaatttgttga 423

                               
Query: 480 gacattttggttatttttgc 499
           ||||||||||||||||||||
Sbjct: 422 gacattttggttatttttgc 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)