Query= MSMg01no334_j11.b1 MSMg01no334_j11.b1 CHROMAT_FILE:
MSMg01no334_j11.b1 PHD_FILE: MSMg01no334_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:04 2005
(572 letters)
>mm_chr4_78707566_78708537
Length = 972
Score = 992 bits (513), Expect = 0.0
Identities = 558/579 (96%), Gaps = 12/579 (2%)
Strand = Plus / Minus
Query: 4 ggaattcttctatactcaccataaccaaaccgtcagtaattaaaaacaaataaaccctga 63
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ggaattcttctatacacatgataaccaaaccgtcagtaattaaaaacaaataaaccctga 601
Query: 64 aagcaaaaaggattaagaaatgcttttcaaacaggttgaaagacacctatcagcaggatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aagcaaaaaggattaagaaatgcttttcaaacaggttgaaagacacctatcagcaggatt 541
Query: 124 ct----------ctagcaatcaggagagagtgagacaattcattttaattactgaagaca 173
|| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 540 ctctattgaaacctagcaatcaggagagagtgagacaattcattttaattacagaagaca 481
Query: 174 ttc-aaaaatgttccaatctcaaaggctgtctttcataaataagagagaaacaaaagctt 232
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 -tcaaaaaatgttccaatctcaaaggctgtctttcataaataagagagaaacaaaagctt 422
Query: 233 ttccaagcaaagtgaatttgaatgttagtcaacattgctcatcccctacatgagataaca 292
|||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 421 ttccaagcaaagtgaaattgaatgtttgtcaacattggtcatcccctacatgagataaca 362
Query: 293 aggagttcaatgtagtagtagttgttgtggtttaaatttatttatttattcattttacat 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggagttcaatgtagtagtagttgttgtggtttaaatttatttatttattcattttacat 302
Query: 353 cctgatcaaagttccttccccttctcctcccattcccaccctcactactcccttccctca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cctgatcaaagttccttccccttctcctcccattcccaccctcactactcccttccctca 242
Query: 413 ttccctcctccccttcttctcagagaactgtaagcctcctcacatggttaccaacatcaa 472
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 241 ttccctcctccccttcttctcagagaactgtaagcctcctcacatgggtaccaacatcaa 182
Query: 473 gatgcagcagaactaaatgcatcctgtctcagtgaggtcagacaaggcattacacctagg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatgcagcagaactaaatgcatcctgtctcagtgaggtcagacaaggcattacacctagg 122
Query: 533 agaaaggcaggcaatcaagtcagagacagctttctgctc 571
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 agaaaggcaggcaatcaagtcagagacagccttctgctc 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j11.g1 MSMg01no334_j11.g1 CHROMAT_FILE:
MSMg01no334_j11.g1 PHD_FILE: MSMg01no334_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:04 2005
(244 letters)
>mm_chr4_78558687_78559330
Length = 644
Score = 451 bits (233), Expect = e-131
Identities = 242/245 (98%), Gaps = 2/245 (0%)
Strand = Plus / Plus
Query: 1 ctatgtatgaaacctattgccaaatactcgggaaaaaaggtattattaaagagtgaattt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgtatgaaacctattgccaaacactcgggaaaaaaggtattattaaagagtgaattt 260
Query: 61 ctatattctttgaatatataatctagttttcttaaatggatagtgaataaagaaagaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatattctttgaatatataatctagttttcttaaatggatagtgaataaagaaagaagt 320
Query: 121 aaattaaatattaagtgatattattaatgtggcag-taaatacaaatttaataaaatttt 179
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 321 aaattaaatattaagtgatattattaatgtgg-aggtaaatacaaatttaataaaatttt 379
Query: 180 tgtttaatatataaattgcataaatgtttccattttagggttttcattactattttgaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtttaatatataaattgcataaatgtttccattttagggttttcattactattttgaat 439
Query: 240 cagct 244
|||||
Sbjct: 440 cagct 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
