Query= MSMg01no334_j14.b1 MSMg01no334_j14.b1 CHROMAT_FILE:
MSMg01no334_j14.b1 PHD_FILE: MSMg01no334_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(655 letters)
>mm_chr4_37803829_37804883
Length = 1055
Score = 1143 bits (591), Expect = 0.0
Identities = 636/651 (97%)
Strand = Plus / Plus
Query: 5 gaattccatactatccatatttataatattctaacattttccgttcttccctccattaca 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatacaatgcatatttataatattctaacattttccgttcttccctccattatg 264
Query: 65 atcaactttcagttttccctctcaacctccaagaaatccaatttgagttgccatactaga 124
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 265 atcaactttcagttttccccctcaacctccaagaaatccaatttgagttgccctactagt 324
Query: 125 ccacagagtgttagtaccctagtgtctggtcaacatattagaagttacatcattaaagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacagagtgttagtaccctagtgtctggtcaacatattagaagttacatcattaaagaa 384
Query: 185 aacggaccttccctctttcagtaactctcaatgccaatacactctcagctagtgaggtat 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 aacggaccttccctctttcagtaactctcaatgccaatacactctcagctagtgtggtat 444
Query: 245 aagaccaatttttgcattctgtgttcagatttgtacatacatggaattgtctgataactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaccaatttttgcattctgtgttcagatttgtacatacatggaattgtctgataactt 504
Query: 305 ctggaaattaccattatcttgatattatataccatttctgactcttgtgagctttctgac 364
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 ctggaaattaccactatcttgatattatataccatttctgactcttgtgatctttctgac 564
Query: 365 ctcacttcaatgaagaaatctgagtttctgtgagacgtttgtgatgtttatgtttttctg 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 ctcacttcaatgaagaaatctgagtttctgtgagacatttgtgatgtttatgtttttctg 624
Query: 425 atggatgagcacttcattctcttttattaatggtatgttgacattttgaaggtttctaca 484
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 625 atggatgagcacttcattctcttttatttatggtatgtcgacattttgaaggtttctaca 684
Query: 485 aagagaagcttctgagttttgaggaaaactcagttctatgggtatagtaggaagtcatta 544
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 685 aagagaagcttcggagttttgaggaaaactctgttctatgggtatagtaggaagtcatta 744
Query: 545 ggacttattttagaattgcatgcatttagcagaataacactattagattatattttagtc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggacttattttagaattgcatgcatttagcagaataacactattagattatattttagtc 804
Query: 605 attatgacatatatctacagtatatgggcccctttatcagtgttgtcccat 655
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attatgacatatatctacagtatatgggcccctttatcagtgttgtcccat 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j14.g1 MSMg01no334_j14.g1 CHROMAT_FILE:
MSMg01no334_j14.g1 PHD_FILE: MSMg01no334_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(582 letters)
>mm_chr4_37951704_37952691
Length = 988
Score = 940 bits (486), Expect = 0.0
Identities = 506/516 (98%), Gaps = 6/516 (1%)
Strand = Plus / Minus
Query: 73 atataattattgaacattattgtgaaaacaagataaatttaatgagagaatcctacaagt 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 atataattattgaacattattgtgaaaacaagataaatttaatgagagaatcctacaagt 929
Query: 133 acctgaaagaatggatatttttatgattatcattttagtactattcaaaagtaaactcca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 acctgaaagaatggatatttttatgattatcattttagtactattcaaaagtaaactcca 869
Query: 193 tcatgtaattttatattgtttaatctcctgcagtaaatgcaatgttatgccatttttaat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 tcatgtaattttatattgtttaatctcctgcagtaaatgcaatgttatgccatttttaat 809
Query: 253 atttatgtttttataaatatgtaacaatatttagagaaggagtcatgaacctgatagaaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atttatgtttttataaatatgtaacaatatttagagaaggagtcatgaacctgatagaaa 749
Query: 313 gcccagggaggtagaagaggaaacagagggattcacattacataaatactgt------ac 366
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 748 gcccagggaggtagaagaggaaacagagggattcacattatataaatactgtcatagtac 689
Query: 367 atgaaagttccatcaactaataaaaatacttgaataaaaaaaaaggtaagaagcatagtt 426
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 688 atgaaagttccatcaactaataaaaatacttgaataaaaaaaaagttaagaagcatagtt 629
Query: 427 atagattcttctttacttttgtaaatgtgatatctaaatatttgcatatttatatgatta 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atagattcttctttacttttgtaaatgtgatatctaaatatttgcatatttatatgatta 569
Query: 487 tatcctgcaaactgccaagcttttataaaatttaacccattgtatatataacatacaatg 546
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatcctgtaaactgccaagcttttataaaatttaacccattgtatatataacatacaatg 509
Query: 547 tttatgaaagcctaatttcagtttttttttccagta 582
|||||||||||||||||||||| |||||||||||||
Sbjct: 508 tttatgaaagcctaatttcagtctttttttccagta 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 988
Length adjustment: 10
Effective length of query: 572
Effective length of database: 978
Effective search space: 559416
Effective search space used: 559416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
