Query= MSMg01no334_j17.b1 MSMg01no334_j17.b1 CHROMAT_FILE:
MSMg01no334_j17.b1 PHD_FILE: MSMg01no334_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(557 letters)
>mm_chr4_67254614_67255570
Length = 957
Score = 944 bits (488), Expect = 0.0
Identities = 537/554 (96%), Gaps = 3/554 (0%)
Strand = Plus / Minus
Query: 5 gaattctttaatattccctatattatgaccataacaatttgagccactttttaaaaaata 64
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 730 gaattctttaatattccatatattatgaccataacaatttgagccacttttttaaaaata 671
Query: 65 -ttttataaatagtatacaaatgtgttttgttcattggcataatctaataaccttggctt 123
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttttataagtagtatacaactgtgttttgttcattggcataatctaataaccttggctt 611
Query: 124 ttacttatagaattcagattggttcatagactatatagcatgtttaattctactaattct 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 610 ttacttatagaattcagattggttcatagactatatagcatctttaattctactaattct 551
Query: 184 atttttctgtacacttgctctacattttatgtaattatttctttatatttattatagact 243
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 550 atttttctgtacacttgctctacatttcatgtaattatttctttatatttattatagact 491
Query: 244 acagtttgctcaatcatgtattaatacttttattacattttcttgaactgcaagataaat 303
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 490 agagtttgctcaatcatgtattaatacttttattacattttctcgaactgcaagataaat 431
Query: 304 ctagctaccagtccatctagtctttatgactaagtcagtgatagctaattcaatatattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctagctaccagtccatctagtctttatgactaagtcagtgatagctaattcaatatattt 371
Query: 364 gttcatattttattggacttaatttatttccttcatataacttggaagatctttacaatg 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 370 gttcatattttattggacttaatttattcccttcatataacttggaagatctttacaatg 311
Query: 424 acttataaatttcttctttaatgtataggggcatttgtgtgtgtgtgtatgtgtctttat 483
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 310 atttataaatttcttctttaatgtataggggcatttgtgtgtgtgt--atgtgtctttat 253
Query: 484 ttgtgtgcatatgtgtatatatttgtgtgtttttgtgtgtgtgtttctgtgtgtttatgt 543
|| ||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct: 252 ttatgtgcatatgtgtatatatttgtgtatttttgtgtgtgtttttctgagtgtttatgt 193
Query: 544 gtatgtgtgtatgt 557
||||||||||||||
Sbjct: 192 gtatgtgtgtatgt 179
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_j17.g1 MSMg01no334_j17.g1 CHROMAT_FILE:
MSMg01no334_j17.g1 PHD_FILE: MSMg01no334_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:05 2005
(607 letters)
>mm_chr4_67083176_67084182
Length = 1007
Score = 1013 bits (524), Expect = 0.0
Identities = 582/606 (96%), Gaps = 9/606 (1%)
Strand = Plus / Plus
Query: 2 gagaaagggatggacatcatgacagccatctgtaaccctagcacaactataataaggtag 61
||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 202 gagaaagggctgggcatcatgacaaccatctgtaaccctagcacaactataataaggtag 261
Query: 62 gaaaagtgtcctaacactgtgcctgaaaagctttgtgcaatggcaacacaaaagtagacc 121
||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct: 262 gaaaagtgtcctaacactgtgcctggaaagctttgcccaatgacaacacaaaagtagacc 321
Query: 122 cttccagacaacaaggaagaaggaaataagcaactccttttgaaatcccacctttacatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttccagacaacaaggaagaaggaaataagcaactccttttgaaatcccacctttacatt 381
Query: 182 tatactgtggcatttttgtacctgcatattttctcttcatcctccctgtccttttccctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatactgtggcatttttgtacctgcatattttctcttcatcctccctgtccttttccctc 441
Query: 242 tctttctccattcatcatgctctcacacatatgcacaaaatagattaactaatcttaaag 301
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tctttctccattcatcattctctcacacatatgcacaaaatagattaactaatcttaaag 501
Query: 302 atatatatgtatgtatgtatgtatatatatatttttacatgatctgtctctgtatatatc 361
|||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 502 atatatatgtatgtat--at-------tatatttttacatgatctgtctctgtatatatc 552
Query: 362 tcatggaaatttgaaattgatcaatagaccttagtattcaaacaacttatattttgaaaa 421
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcatgtaaatttgaaattgatcaatagaccttagtattcaaacaacttatattttgaaaa 612
Query: 422 gcattgagaactctttgtaattagcccttgactcatactaaatattgtactatataatat 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcattgagaactctttttaattagcccttgactcatactaaatattgtactatataatat 672
Query: 482 tgagataatgttgaatgtatgtaggcggctgtttcacagttaattcattcatactggttt 541
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 673 tgagataatgttgaatgtatgtagggggctgtttcacagttaatacattcatactggttt 732
Query: 542 ttagtgttgtgccttgttatatagaacatacaataaactataagccagaaatatacatat 601
||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 ttagtctagtgccttgttatatagaacatacaataaactataagccagaaatacacatat 792
Query: 602 actcat 607
||||||
Sbjct: 793 actcat 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
