Query= MSMg01no334_k17.b1 MSMg01no334_k17.b1 CHROMAT_FILE:
MSMg01no334_k17.b1 PHD_FILE: MSMg01no334_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:10 2005
(548 letters)
>mm_chr4_45502602_45503549
Length = 948
Score = 1013 bits (524), Expect = 0.0
Identities = 542/548 (98%)
Strand = Plus / Plus
Query: 1 cacacttcctggtaagggggtactatttccagtcaggagaacacagcacctcctctctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacttcctggtaagggggtactatttccagtcaggagaacacagcacctcctctctct 260
Query: 61 tttcagactccctagacctcacagagaagaaaaggacgtgagccttctcaacccaaacct 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tttcagactccctagacctcacagagaagaaaaggacgtgagctttctcaacccaaacct 320
Query: 121 ttactacagaccagcctcaccccaaacgcccaccaacctccccctcccccttcaggtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttactacagaccagcctcaccccaaacgcccaccaacctccccctcccccttcaggtcag 380
Query: 181 gtgtctagcaaagagcaaataagtccccaatctcccagctgctgccccagggagggcggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtctagcaaagagcaaataagtccccaatctcccagctgctgccccagggagggcggg 440
Query: 241 ggttagcatccccctcgctggattgttatttaaattgtaggtttaattagaaaccacagg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggttagcatcccccttgctggattgttatttaaattgtaggtttaattagaaaccacagg 500
Query: 301 agccgctcttctctcagggctcctggaatttaaggcatttgcaaggcctgtaaactcagg 360
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agccgctcttctctctgagctcctggaatttaaggcatttgcaaggcctgtaaactcagg 560
Query: 361 aactggagaagaccccagcctctgcctggttgagtggcagccagtggcagcggccctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactggagaagaccccagcctctgcctggttgagtggcagccagtggcagcggccctggc 620
Query: 421 agggcagtacaagagactgacagttacctagaatgtaatgcccgaaaagggagagcagac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggcagtacaagagactgacagttacctagaatgtaatgcccgaaaagggagagcagac 680
Query: 481 agttgtccctgatcactaaactggagcacatgaccagtgaagacccaggcccagagcacc 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 agttgtccctgatcactaaactggagcacatgaccagggaagacccaggcccagagcacc 740
Query: 541 cagcaatt 548
||||||||
Sbjct: 741 cagcaatt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_k17.g1 MSMg01no334_k17.g1 CHROMAT_FILE:
MSMg01no334_k17.g1 PHD_FILE: MSMg01no334_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:10 2005
(619 letters)
>mm_chr4_45674811_45675829
Length = 1019
Score = 1122 bits (580), Expect = 0.0
Identities = 613/632 (96%), Gaps = 13/632 (2%)
Strand = Plus / Minus
Query: 1 cataaataagagtgttggatgtggaagatttattttattttttcacttcccaatctgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cataaataagagtgttggatgtggaagatttattttattttttcacttcccaatctgggt 902
Query: 61 gcctctgatttctctctttgcttgatggcgccggcttatacctgcaagagcaacacttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gcctctgatttctctctttgcttgatggcgccggcttatacctgcaagagcaacacttca 842
Query: 121 tagaaatggcaagagcagataccctgtaggccagcaagatggctcagtggataaagcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 841 tagaaatggcaagagcagataccctgtaggccagcaagatggctcagtggataaagcgcc 782
Query: 181 tgctgtacaaacagcattgagtttgatcgctgggacccacataaaggcagaaggagagaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 781 tgctgtacaaacagcattgagtttgatcgctgggacccacataaaggcagaacgagagaa 722
Query: 241 ctgactccacatagtgttcacatgacatatccccacacaccatggacacatacatacaca 300
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ccgactccacagggtgttcacatgacatatccccacacaccatggacacatacatacaca 662
Query: 301 atagcaaggttaaatagaaataatgtttttcaaaaggaaaagagatgtcctctattgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atagcaaggttaaatagaaataatgtttttcaaaaggaaaagagatgtcctctattgtta 602
Query: 361 ctgattctcatgagaaagcactcggtctgccgcaattggctgtgatgctggctctgcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ctgattctcatgagaaagcactcggtctgccgcaattggctgtgatgctggctctgcaga 542
Query: 421 tgtgggagatgttcctgatgaagtggaggacgaccttttcc-------------aagttt 467
||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 541 tgtgggagatgttcctgatgaagtggaggacgaccttttccttgttagcttactaagttt 482
Query: 468 tcatcacgagtcatcatagatttgttcgctttttcttcccagtatttactgagatgattg 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccatcacgagtcatcatagatttgttcgctttttcttcccagtatttactgagatgattg 422
Query: 528 ttttttgattttgtttttaagtgctggttgaactcacacatgctaaacagtcactttacc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttttttgattttgtttttaagtgctggttgaactcacacatgctaaacagtcactttacc 362
Query: 588 actaacccatccctcagcctgtttctgtgggt 619
||||||||||||||||||||||||||||||||
Sbjct: 361 actaacccatccctcagcctgtttctgtgggt 330
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
