Query= MSMg01no335_a21.b1 MSMg01no335_a21.b1 CHROMAT_FILE:
MSMg01no335_a21.b1 PHD_FILE: MSMg01no335_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:41 2005
(666 letters)
>mm_chr4_17873624_17874685
Length = 1062
Score = 1210 bits (626), Expect = 0.0
Identities = 646/655 (98%), Gaps = 6/655 (0%)
Strand = Plus / Plus
Query: 13 gaattcttgacccaa-tatcattcatctttttgctatttcattttgtgttccttccctat 71
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattcttgacccaaatataattcatctttttgctatttcattttgtgttccttccctat 272
Query: 72 tctaatgctgtattttccaagagtcagactgatcaggaaaaagtaggagacaatatttaa 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tctaatgctgtattttccaagagtcagactgatcaggaaaaagtaggagacaatatttaa 332
Query: 132 catgaattaagtgtctttagtgttatgagtggccaaggattctatcataataattgctaa 191
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 catgaattaagt--ctttagtgttatgagtggccaaggattctatcataataattgctaa 390
Query: 192 taaaaccatagaggggtgaaaagaggaattgatagggatttctttcagcctattacagca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 taaaaccatagaggggtgaaaagaggaattgatagggatttctttcagcctattacagca 450
Query: 252 ataattttcagaaaaaaattaagctttctgccggtcactgacaagagcagaggtttcact 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ataattttcagaaaaaaattaagctttctgccggtcactgacaagagcagaggtttcact 510
Query: 312 caaacaaatctgtcccatagaatacttctctaagtcaggctggtttctattccacttgac 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caaacaaatctgtcccatagaatacttctctaagtcaggctggtttctattccacttgac 570
Query: 372 ataaaacccaaattctcaacaagcatatatggccttgggaacatttcctttttctagact 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ataaaacccaaattctcaacaagcatatatggccttgggaacatttcctttttctagact 630
Query: 432 acaatttttggacactgtaatttccattccgtttcattctctataagcttaatgtcagag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acaatttttggacactgtaatttccattccgtttcattctctataagcttaatgtcagag 690
Query: 492 ttgaaggccagataagtaaatgacttgttgaaacgttaagtgttctcattctccagaagg 551
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 691 ttgaaggccagataagtaaatgacttg---aaacgttaagtgttctcattctccagaagg 747
Query: 552 aagcaacttaaaatcacgtatgtcagtcgtctgaatctagacttctgagatcaaagaaca 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aagcaacttaaaatcacgtatgtcagtcgtctgaatctagacttctgagatcaaagaaca 807
Query: 612 tttgtatgtagtttggctattacagatgcctgtgtagtcnaaacaaagctacaat 666
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 808 tttgtatgtagtttggctataacagatgcctgtgtagtcaaaacaaagctacaat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1062
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1052
Effective search space: 690112
Effective search space used: 690112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_a21.g1 MSMg01no335_a21.g1 CHROMAT_FILE:
MSMg01no335_a21.g1 PHD_FILE: MSMg01no335_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:41 2005
(647 letters)
>mm_chr4_18009293_18010341
Length = 1049
Score = 1197 bits (619), Expect = 0.0
Identities = 641/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Minus
Query: 1 aagaagatatagtagggtgttatgttctagaacagtacaggtaagcaaagagaatgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 aagaagatatagtagggtgttatgttctagaacagtacaggtaagcaaagagaatgtatt 790
Query: 61 atagaagcaacaacatgtaagtaggaaatgaacagaaagaaggcatttaatagggcatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 atagaagcaacaacatgtaagtaggaaatgaacagaaagaaggcatttaatagggcatag 730
Query: 121 gcaaaagggcattctcatccaaatgaaataggtatacaaacaaggactgaagcaagggag 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 729 gcaaaagggcattctcatccaaatgaaataactatacaaacaaggactgaagcaagggag 670
Query: 181 gaaagagaggaaaattaaaaagagcagtagagacccatgcaggttaagaaaggtccagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 gaaagagaggaaaattaaaaagagcagtagagacccatgcaggttaagaaaggtccagga 610
Query: 241 gatggacagtgtaggccctaagtctaaacgtgaaactagaaaattctagaaagtctggga 300
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 609 gatggacagtgtaggccctaagtctaaacgcgaaactagaaaactctagaaagtctggga 550
Query: 301 agaaggcagctactgcaaatattgaagaagaaaaaatatgttaggttaagatgtaaatgg 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 549 agaaggcagctactgcaaatattaaagaagaaaaaatatgttaggttaagatgtaaatgg 490
Query: 361 tcaatgatgaaatacatgtgtgctctagaatgttaggtcaaagtattgcagataataaaa 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 489 tcaatgatgaaatacatgtgtgctctagaatgttatgtcaaagtattgcagataataaaa 430
Query: 421 ataagtcaaattaagtttcagttgctaaaaaggaagtgagttactgtagcatatttatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataagtcaaattaagtttcagttgctaaaaaggaagtgagttactgtagcatatttatat 370
Query: 481 aggaaggaaaacttctccatccttaatcatatactgaatttcaaatgcctagctatgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggaaggaaaacttctccatccttaatcatatactgaatttcaaatgcctagctatgctc 310
Query: 541 atttacaacttttatatttgaggatatggttgaatgtttgggtataattgcgaatataaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atttacaacttttatatttgaggatatggttgaatgtttgggtataattgcgaatataaa 250
Query: 601 ctcctgtataattttttttt--gtgaggagtctaattcacatagaagtg 647
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 249 ctcctgtataatttttttttttgtgaggagtctaattcacatagaagtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1049
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1039
Effective search space: 661843
Effective search space used: 661843
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
