BAC Information

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BAC

Clone NameMSMg01-335M06
Chromosome4 (Build37)
Map Location 83,304,738 - 83,305,184
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335M06.T7 (MSMg01no335_m06.b1)MSMg01-335M06.TJ (MSMg01no335_m06.g1)
ACCAG450945AG450946
length736743
length of high quality
(start - end)
604 (77 - 680)424 (74 - 497)
definitionCHROMAT_FILE: MSMg01no335_m06.b1 PHD_FILE: MSMg01no335_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:38 2005CHROMAT_FILE: MSMg01no335_m06.g1 PHD_FILE: MSMg01no335_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCCCCTCTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATATGCTGGCATTTAGATAAACAAACCCACCAACTA
TCCCAGAAGTAAGAGAAAACTGTAGACAGAACAGGCTCAAACAGAATATG
GGATTTTGTCATATTTTAAGAAGTCACTGATAGGACTAAGGGGACAACTG
AGCAGTTAAGCGCACTGACTGCTCTTGCACAGGACCCAGTTTCAAATCCC
AGCACCCACACAGTGGCTTGCAAAAGTCCATAGCTCCAAGTCCTGGGGAT
CTATCTAGTACCTTCTTCTACCTCTGTGGGCATCAGACATCTACATGCTT
AGCACACATGCAGGCAAAATGCCCAAAGGCATAAAATAAATAAATATCAA
AATAATTTTAATAAGTTACTAATAAATAAAAATGGATAGATAGGTAACTG
GGTTTTTGCAATTTTCCTTAGTAACTCCTAATTCTAAAGGAAAAGGAGGC
TGTCTGGAGATATTAGTCTTGTTTTACAATTATGGAAGTTGAAACCTGGA
GCAACAAACCTATATGGCTTGCCCATAGCCATGCTTGATGCAAACAGAAA
AAAACAGGATCCAAGTCCAAATCTATTTGGTTATACAAAAATTCTTTCCA
TCAAGCCAAGCTGTAGGATGACTCTAATACAAAATGATGTCGTTACTGGC
AAACAGGCCAATCTTGACAAGCCAGTAAGGAACATG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCCTGTGCTCTGGGCAAGCAGAGGTG
GGAGGGCTGCCAGCCACTTTCCACTTGGCCCCGGGTGGGCATCTAAGCCA
CTAACCCCACTCGGCAGGAGGTGGACAATGGGCAGCCTCAGATACCAGGG
GCCTTGGGGTGACACCCTTGGCCCCCGGGGTTACAGGAGAGAGGGCTGAG
GGAGAGGTTCCCACTCAGGAGAGAGTCCTTAGTCCGGCCCTTGACTGGAG
CACAGGAAGGCCTTCTATTTTTAGACTAGAAATGGCTATTAGAAGAAAGC
CTATCCCATCATCCAAGCGTAGTGGGCCTTGATGAACAGAGACAGTCTAT
GATTTTAGAGCTTTATTGTAGAAAGGCGAGGGAAAGAGAAAAGGGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATA
CTGTTCTTGCCCCATAGCATGTAAGAGGGATAGATAGATCGAGTTATTGC
TTACCAGTACTACTGACACCATCTTATATTGATTGTTCATAATGATGCGA
ATGTCTACCTATCCCTATTATCTTTCTCGCGTCCCTCCTAAGTTGCACTC
TTCACCCCTTTCGTTTTCTACCTGTTTCTCGCCCCCATTTTTATCTTCCC
CGGTCCTCTTCTCTTCGCGTTTCTGTCTTCTTGTCAGGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_m06.b1 MSMg01no335_m06.b1 CHROMAT_FILE:
MSMg01no335_m06.b1 PHD_FILE: MSMg01no335_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:38 2005
         (604 letters)



>mm_chr4_83304181_83305184
          Length = 1004

 Score =  843 bits (436), Expect = 0.0
 Identities = 445/448 (99%), Gaps = 2/448 (0%)
 Strand = Plus / Minus

                                                                        
Query: 157  gacccagtttcaaatcccagcacccacacagtggcttgcaaaagtccatagctccaag-t 215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1004 gacccagtttcaaatcccagcacccacacagtggcttgcaaaagtccatagctcc-agtt 946

                                                                        
Query: 216  cctggggatctatctagtaccttcttctacctctgtgggcatcagacatctacatgctta 275
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 945  cctggggatctatctagtaccttcttctacctctgtgggcatcagacatctacatgctca 886

                                                                        
Query: 276  gcacacatgcaggcaaaatgcccaaaggcataaaataaataaatatcaaaataattttaa 335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  gcacacatgcaggcaaaatgcccaaaggcataaaataaataaatatcaaaataattttaa 826

                                                                        
Query: 336  taagttactaataaataaaaatggatagataggtaactgggtttttgcaattttccttag 395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825  taagttactaataaataaaaatggatagataggtaactgggtttttgcaattttccttag 766

                                                                        
Query: 396  taactcctaattctaaaggaaaaggaggctgtctggagatattagtcttgttttacaatt 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  taactcctaattctaaaggaaaaggaggctgtctggagatattagtcttgttttacaatt 706

                                                                        
Query: 456  atggaagttgaaacctggagcaacaaacctatatggcttgcccatagccatgcttgatgc 515
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705  atggaagttgaaacctggagcaacaaacctatatggcttgcccatagccatgcttgatgc 646

                                                                        
Query: 516  aaacagaaaaaaacaggatccaagtccaaatctatttggttatacaaaaattctttccat 575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645  aaacagaaaaaaacaggatccaagtccaaatctatttggttatacaaaaattctttccat 586

                                        
Query: 576  caagccaagctgtaggatgactctaata 603
            ||||||||||||||||||||||||||||
Sbjct: 585  caagccaagctgtaggatgactctaata 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)