BAC Information

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BAC

Clone NameMSMg01-335P18
Chromosome4 (Build37)
Map Location 131,364,001 - 131,541,159
singlet/doubletdoublet
Overlap genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1
Upstream geneSdc3, Laptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799
Downstream geneLOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335P18.T7 (MSMg01no335_p18.b1)MSMg01-335P18.TJ (MSMg01no335_p18.g1)
ACCAG451112AG451113
length745761
length of high quality
(start - end)
365 (62 - 426)399 (67 - 465)
definitionCHROMAT_FILE: MSMg01no335_p18.b1 PHD_FILE: MSMg01no335_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:56 2005CHROMAT_FILE: MSMg01no335_p18.g1 PHD_FILE: MSMg01no335_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,364,001 - 131,364,365)(131,540,761 - 131,541,159)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTAGAT
TCTTNAGAAGAATTACTCTAACCTAGGAACCCACAGACTCTCCAGGAATG
AGTAATGGTCACCATTACGTTCCTATAGAACCCTACATGAATCTGAGCTT
TGGCCCTAGGCCTAGGAGGCGCTCAGAACAGGCTTACCATCTTCATCTGT
CTGGAAGGTGACCTCCTTGCCCTCCTTGCGCCCCTCAGGGTTTGTGAGAA
TCAGACGCACGTGGATGTTTCTGAATGGCAGCAGATTCTTGATGGTGTAG
CGGCTGGCACCCCGCTCCATCTTCACACACTCCCGGATGGTCTGGTTGTG
GCTGCCGCCCAGGGTGTAGCGATAGCAAAGGGACACAGTGTAGGTATGAC
AACGTGTGACATTATAGCCCAGGGGCTCCCACTGCAGGGTCAGCTGGCGA
GCCTGGATCTCAGCATAAGCCAGACCTTTTGGGGGCCCTCGTGGGCTCTG
GAGACACAGGAAGCTTTGAGAACTTGTAGGATATGGTTATGGGCAATGGA
GAATAACAGAGCTTTTTTCTTCTCCCATAATCCATTCCTCTTTTTCTTCC
ATGAACTTCATGTTTCCTTCGAATTGCCTATTTTATCAACTTTTTGTTCT
GTATTACTCCCCCTTTATCCCCCCCCCTCCTTCCTGCCGTCTTTTTCTCT
TTGGATCCGCGTATTTACCGTCCTCTTTTTATCCCTCGTCTATTT
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAATAGAAAGAGATAAAGAATTTGAGAGAACCCT
GGCAGACGTCATTTGTGAAGGACCAAACTGAAGTTATGAATATTGATAGG
ATACAGTGCAGGCACAACTCGTACTCCCATGATACTCCTGGTAAAGACAC
ATGACCCGGGGCTGGGGATATGGCTCACTGTGAAGTACTTGCCTGGAGCT
CAGGAGGCAGGACTAAAGACTAAAGACTATTAGACTAAAGACGCATAATC
TACAGCTGGACCATTCTGTAACCACAGGCCCAACCTTGGTGAATGGGGTT
TGAGAATTATGTGGCAGTGTGTGGCAGCGTTAATTTCCTGGTTCTGACAC
TATGTAGAAAGATGAACTTATTTGCAGGAAGTACATACAAAAGTCTTCAG
GAATCTTGGTGTCATTAGATTCAAAATTTTTGCCATGGCTTGGAGGAAAA
TAATTTACATTATATATGACTTAAGAATCACAATTGTGGGGGTGGGTGGC
TATGGCCTATTTTTTTTTCTTCCTTCTTTTGCCTACCCCTCCCTCTTCTC
TTTTCTTTTCTTACACCCTTTTTTTTTCTTTTTCCCCTCTTTTTTTCTCC
CCTCTTTTTTTCTTCCCTTATCTCCTCTCTTCCTCTCTTTTTCTTCTCCC
CCTCTACTTTCTTCCCTTTTTTTTTCCTTACCTTTTTTTTCTCTCTTTTT
TTCTTCTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_p18.b1 MSMg01no335_p18.b1 CHROMAT_FILE:
MSMg01no335_p18.b1 PHD_FILE: MSMg01no335_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:56 2005
         (365 letters)



>mm_chr4_131363801_131364565
          Length = 765

 Score =  683 bits (353), Expect = 0.0
 Identities = 362/365 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attactctaacctaggaacccacagactctccaggaatgagtaatggtcaccattacgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attactctaacctaggaacccacagactctccaggaatgagtaatggtcaccattacgtt 260

                                                                       
Query: 61  cctatagaaccctacatgaatctgagctttggccctaggcctaggaggcgctcagaacag 120
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatagtcccctacatgaatctgagctttggccctaggcctaggaggcgctcagaacag 320

                                                                       
Query: 121 gcttaccatcttcatctgtctggaaggtgacctccttgccctccttgcgcccctcagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttaccatcttcatctgtctggaaggtgacctccttgccctccttgcgcccctcagggt 380

                                                                       
Query: 181 ttgtgagaatcagacgcacgtggatgtttctgaatggcagcagattcttgatggtgtagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtgagaatcagacgcacgtggatgtttctgaatggcagcagattcttgatggtgtagc 440

                                                                       
Query: 241 ggctggcaccccgctccatcttcacacactcccggatggtctggttgtggctgccgccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctggcaccccgctccatcttcacacactcccggatggtctggttgtggctgccgccca 500

                                                                       
Query: 301 gggtgtagcgatagcaaagggacacagtgtaggtatgacaacgtgtgacattatagccca 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgtagcgatagcaaagggacacagcgtaggtatgacaacgtgtgacattatagccca 560

                
Query: 361 ggggc 365
           |||||
Sbjct: 561 ggggc 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no335_p18.g1 MSMg01no335_p18.g1 CHROMAT_FILE:
MSMg01no335_p18.g1 PHD_FILE: MSMg01no335_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:56 2005
         (399 letters)



>mm_chr4_131540687_131541485
          Length = 799

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatagaaagagataaagaatttgagagaaccctggcagacgtcatttgtgaaggaccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 473 aaatagaaagagataaagaatttgagagaaccctggcagacgtcatttgtgaaggaacaa 414

                                                                       
Query: 61  actgaagttatgaatattgataggatacagtgcaggcacaactcgtactcccatgatact 120
           |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 413 actgaagttatgaacactgataggatacagtgcaggcacagctcgtactcccatgatact 354

                                                                       
Query: 121 cctggtaaagacacatgacccggggctggggatatggctcactgtgaagtacttgcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 cctggtaaagacacatgacccggggctggggatatggctcactgtgaagtacttgcctgg 294

                                                                       
Query: 181 agctcaggaggcaggactaaagactaaagactattagactaaagacgcataatctacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 agctcaggaggcaggactaaagactaaagactattagactaaagacgcataatctacagc 234

                                                                       
Query: 241 tggaccattctgtaaccacaggcccaaccttggtgaatggggtttgagaattatgtggca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tggaccattctgtaaccacaggcccaaccttggtgaatggggtttgagaattatgtggca 174

                                                                       
Query: 301 gtgtgtggcagcgttaatttcctggttctgacactatgtagaaagatgaacttatttgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 173 gtgtgtggcagcgttaatttcctggttctgacactatgtagaaagatgaccttatttgca 114

                                                  
Query: 361 ggaagtacatacaaaagtcttcaggaatcttggtgtcat 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ggaagtacatacaaaagtcttcaggaatcttggtgtcat 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)