BAC Information

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BAC

Clone NameMSMg01-336D19
Chromosome4 (Build37)
Map Location 34,769,467 - 34,962,359
singlet/doubletdoublet
Overlap geneZfp292, Cga, Mobkl2b
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336D19.T7 (MSMg01no336_d19.b1)MSMg01-336D19.TJ (MSMg01no336_d19.g1)
ACCAG451305AG451306
length728748
length of high quality
(start - end)		594 (64 - 657)444 (71 - 514)
definitionCHROMAT_FILE: MSMg01no336_d19.b1 PHD_FILE: MSMg01no336_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:15 2005CHROMAT_FILE: MSMg01no336_d19.g1 PHD_FILE: MSMg01no336_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,961,766 - 34,962,359)(34,769,467 - 34,769,908)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAGCCTATCCTCAGCTCAAGGACTTTCTAGGACGTTGGAACATTGATAA
AGGCTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGATA
ATACTAAAAGAGAACATGTGGATCCATACACCAGACTAACTCGGGAATGG
AAAATTAATGTATGGGTTAGAGAGAACGCCAGACTCCAGGAGGTGAGTTT
CCGTGAAACTCTCTGCCTCGTGAGTGGCTTCCAGGCCTCTCGGCCTGTCA
AGCTGACTCCACCAGAGTGCGTTGCATTTATTCACAGATATGGAAGAGAA
AGAAGAGAGACAAATTCAGAATGGAAAGCACAGCTCTGCTCTGTGGCACC
TCGGGTTGTTGACCAAATCCCAGCACCTGCTGAGTCACATTCACTCCCTC
TTAAAACCTGAAATACATTTCTGAAGACAGCCACATACATCATTTCCCAA
GACAGGATAGAACCAGCCTCACTCTGTCTGGGACAGTGACCTCTTTTTTA
AATTAGTTATTTGATAATGTATTTTGATTATACATTATTGTATATGTGAA
ATGCTTAAATCTAGATAACTAACATATCTGCCACCCTCATACTTACTATT
TCTGTAGGGAGATTATGGAAACTCTTAGGAATTTCAAGCAACTGTCTATT
GTCACTGGCCACTGTGCTGTGTACCAGT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTGTTGAAAGCTCATATGGCACCAATTGTA
TAATTATTTCCCACAGTTACCTCCATTAAACTAACTCTTAATATTTGAAG
TGTGTGTGCTAATTCCTCTCCCTCTATTTATATGTGTGTGTGTGTGTGTT
TGTGTGTGTGTATATATATACACACACATATATATATAACACATCTATGT
ATATGCATATGTAAATGTACACAATATGCCAAGTGAAAAAGTTCATATCC
TCAAAATACACAAAAACTTAACTAAAAGATTGTGTTGCTGTACTGTTATC
CAGTGTATGTTGAACGTGCTGTGCACTAGCATTCAGAGAAAACAGTTCTG
TGGGCCTGCTCCTCTCCTCTCACTCCTACACAGGTTCCAGGAACATGGCC
CCTTACCTCAAACTTAATTTTTTCCTGATTTGTGAGAAGTTCTCTTAAAA
AAAAAAAAAAAAGCCAATAGCACAGATAAGAGAACTAAATTTAAATTAAT
GACTGAATACACAATTTGTGGAAGTAAAATATAACCATTTTGAAAACAAT
TAATTATTTTAAAAATTACCAAGCCCCTTATTTTATGAATTACCCAAATT
TTCTCCCATTTAGGGAACTATGTCCTATTTTATTAAAATAGGCCCAAATT
TCCAATGTAATAACCTCCACAACCATTTTATTTTTTTCCACAACACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_d19.b1 MSMg01no336_d19.b1 CHROMAT_FILE:
MSMg01no336_d19.b1 PHD_FILE: MSMg01no336_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:15 2005
         (594 letters)



>mm_chr4_34961391_34962384
          Length = 994

 Score = 1125 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctcaaggactttctaggacgttggaacattgataaaggcttagctatgtcagaattca 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 969 agctcaaggactttctaggacgttggaacattgatgaaggcttagctatgtcagaattca 910

                                                                       
Query: 61  atcttaaaaggcacttataataggataatactaaaagagaacatgtggatccatacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 atcttaaaaggcacttataataggataatactaaaagagaacatgtggatccatacacca 850

                                                                       
Query: 121 gactaactcgggaatggaaaattaatgtatgggttagagagaacgccagactccaggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 gactaactcgggaatggaaaattaatgtatgggttagagagaacgccagactccaggagg 790

                                                                       
Query: 181 tgagtttccgtgaaactctctgcctcgtgagtggcttccaggcctctcggcctgtcaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 tgagtttccgtgaaactctctgcctcgtgagtggcttccaggcctctcggcctgtcaagc 730

                                                                       
Query: 241 tgactccaccagagtgcgttgcatttattcacagatatggaagagaaagaagagagacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgactccaccagagtgcgttgcatttattcacagatatggaagagaaagaagagagacaa 670

                                                                       
Query: 301 attcagaatggaaagcacagctctgctctgtggcacctcgggttgttgaccaaatcccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 attcagaatggaaagcacagctctgctctgtggcacctcgggttgttgaccaaatcccag 610

                                                                       
Query: 361 cacctgctgagtcacattcactccctcttaaaacctgaaatacatttctgaagacagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cacctgctgagtcacattcactccctcttaaaacctgaaatacatttctgaagacagcca 550

                                                                       
Query: 421 catacatcatttcccaagacaggatagaaccagcctcactctgtctgggacagtgacctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 catacatcatttcccaagacaggatagaaccagcctcactctgtctgggacagtgacctc 490

                                                                       
Query: 481 ttttttaaattagttatttgataatgtattttgattatacattattgtatatgtgaaatg 540
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tttttaaaattagttatttgataatgtattttgattatacattattgtatatgtgaaatg 430

                                                                 
Query: 541 cttaaatctagataactaacatatctgccaccctcatacttactatttctgtag 594
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 cttaaatctggataactaacatatctgccaccctcatacttactatttctgtag 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no336_d19.g1 MSMg01no336_d19.g1 CHROMAT_FILE:
MSMg01no336_d19.g1 PHD_FILE: MSMg01no336_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:15 2005
         (444 letters)



>mm_chr4_34769267_34770110
          Length = 844

 Score =  855 bits (442), Expect = 0.0
 Identities = 442/442 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgttgaaagctcatatggcaccaattgtataattatttcccacagttacctccattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgttgaaagctcatatggcaccaattgtataattatttcccacagttacctccattaaa 260

                                                                       
Query: 61  ctaactcttaatatttgaagtgtgtgtgctaattcctctccctctatttatatgtgtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaactcttaatatttgaagtgtgtgtgctaattcctctccctctatttatatgtgtgtg 320

                                                                       
Query: 121 tgtgtgtgtttgtgtgtgtgtatatatatacacacacatatatatataacacatctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtgtttgtgtgtgtgtatatatatacacacacatatatatataacacatctatgt 380

                                                                       
Query: 181 atatgcatatgtaaatgtacacaatatgccaagtgaaaaagttcatatcctcaaaataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgcatatgtaaatgtacacaatatgccaagtgaaaaagttcatatcctcaaaataca 440

                                                                       
Query: 241 caaaaacttaactaaaagattgtgttgctgtactgttatccagtgtatgttgaacgtgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaaacttaactaaaagattgtgttgctgtactgttatccagtgtatgttgaacgtgct 500

                                                                       
Query: 301 gtgcactagcattcagagaaaacagttctgtgggcctgctcctctcctctcactcctaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcactagcattcagagaaaacagttctgtgggcctgctcctctcctctcactcctaca 560

                                                                       
Query: 361 caggttccaggaacatggccccttacctcaaacttaattttttcctgatttgtgagaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggttccaggaacatggccccttacctcaaacttaattttttcctgatttgtgagaagt 620

                                 
Query: 421 tctcttaaaaaaaaaaaaaaaa 442
           ||||||||||||||||||||||
Sbjct: 621 tctcttaaaaaaaaaaaaaaaa 642


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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