Query= MSMg01no336_e05.b1 MSMg01no336_e05.b1 CHROMAT_FILE:
MSMg01no336_e05.b1 PHD_FILE: MSMg01no336_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:17 2005
(551 letters)
>mm_chr4_44998183_44999133
Length = 951
Score = 1027 bits (531), Expect = 0.0
Identities = 543/547 (99%)
Strand = Plus / Plus
Query: 5 gaattccccatttctctggtttgccggagcagcctgctgagagccagggttcatctacta 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccccagaactctggtttgccggagcagcctgctgagagccagggttcatctacta 264
Query: 65 aatagcacaaaggctgtaagatgctgggctagccatggcaatcaggcttctgtgggaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatagcacaaaggctgtaagatgctgggctagccatggcaatcaggcttctgtgggaaag 324
Query: 125 gctgccccagccttggaccccagttctggaaagcaggctacttcccactctagagttggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctgccccagccttggaccccagttctggaaagcaggctacttcccactctagagttggc 384
Query: 185 agctgaggatcccccctccttcagtgctgccccttcagaagcctggtgggagctaggctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agctgaggatcccccctccttcagtgctgccccttcagaagcctggtgggagctaggctg 444
Query: 245 ctgtcatcttgcctgtatacagaggctgcctgggggtggggactaaaggttacctgtctg 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtcatcttgcctgtatacagaggcagcctgggggtggggactaaaggttacctgtctg 504
Query: 305 gacaaccaacaatcctctaagcatggaggagttcggtaacctggggtgcattcaagtctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gacaaccaacaatcctctaagcatggaggagttcggtaacctggggtgcattcaagtctg 564
Query: 365 agaacccaagtgcccacacctgtatgcatgcatggaaaactggcaggtcttgtggggcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaacccaagtgcccacacctgtatgcatgcatggaaaactggcaggtcttgtggggcaa 624
Query: 425 gttggcagctggcaatgccaccaaaagtcaaatcaggtagggctgctttcccagtagagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttggcagctggcaatgccaccaaaagtcaaatcaggtagggctgctttcccagtagagg 684
Query: 485 gctcaggagtgaggggacctcttggagccctatcttcagagatgccacatccagttcttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctcaggagtgaggggacctcttggagccctatcttcagagatgccacatccagttcttg 744
Query: 545 gagaagg 551
|||||||
Sbjct: 745 gagaagg 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_e05.g1 MSMg01no336_e05.g1 CHROMAT_FILE:
MSMg01no336_e05.g1 PHD_FILE: MSMg01no336_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:17 2005
(385 letters)
>mm_chr4_45170842_45171626
Length = 785
Score = 571 bits (295), Expect = e-167
Identities = 352/391 (90%), Gaps = 33/391 (8%)
Strand = Plus / Minus
Query: 1 actgtgtgaacacagatgagaggaaaatcggtctgatgccaccctgaccgggatcatctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 actgtgtgaacacagatgagaggaaaatcggtctgatgccaccctgaccgggatcatctg 660
Query: 61 cagcccccctgaatctaaagtttcctgatgaattgcctgtgctgcagcctgacccattgg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 659 cagaccccctgaatctaaagtttcctgatgaattgcctgtgctgcagcctgacccatcgg 600
Query: 121 tcctaagtggcacatggacacctattgctgtgggttggaccagttatcttctccaggaag 180
||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 599 tcctaagtggcacatggac---------------------cagttgtcttctccaggaag 561
Query: 181 cccaagagtactgagcggcaaggctcctgtcccagagtccttctgcccttccatcagc-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccaagagtactgagcggcaaggctcctgtcccagagtccttctgcccttccatcagcgc 501
Query: 239 ----tttttttgattgggggttggggggttatcaggaaaggttccagagttgccatgctc 294
| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acact------gattggggtttggggggttatcaggaaaggttccagagttgccatgctc 447
Query: 295 tggactcggaacccaatggcagagtcctaaggggcaggagcaggacatataaagaatgct 354
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tggactcagaacccaatggcagagtcctaaggggcaggagcaggacatataaagaatgct 387
Query: 355 tcctgtgatggtttctgtatgctttgcccag 385
|||||||||||||||||||||||||| ||||
Sbjct: 386 tcctgtgatggtttctgtatgctttgtccag 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space: 291776
Effective search space used: 291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
