BAC Information

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BAC

Clone NameMSMg01-336G04
Chromosome4 (Build37)
Map Location 83,373,382 - 83,373,617
singlet/doubletsinglet
Overlap gene4930473A06Rik
Upstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
Downstream geneLOC668010, Bnc2, LOC100040660, LOC624465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336G04.T7 (MSMg01no336_g04.b1)MSMg01-336G04.TJ (MSMg01no336_g04.g1)
ACCAG451417AG451418
length709729
length of high quality
(start - end)
338 (72 - 409)238 (70 - 307)
definitionCHROMAT_FILE: MSMg01no336_g04.b1 PHD_FILE: MSMg01no336_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:26 2005CHROMAT_FILE: MSMg01no336_g04.g1 PHD_FILE: MSMg01no336_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATCCGCGGAA
TTCTGGTTTCTCTTGAGAGAGATAAATTTGAGAGCCCTAAGAGGGGCTGT
AGCAGCTGCTGCCCTCCTTGCTGCTGGTGGCTTCTCTGGTGTTGCTGTTG
CTGCTGCTGCTGTTATTTTTGCTATGGCTGGATTTCTGGATTTCTGGATT
ACTGGATTGCTGGATTGTTTTGGTGGTTAGCTGGCTGAAGATATTCTGAT
GATGAAAATTGGACTTGCCCCAGAGAACTTGATGCTCCTAGCCTGCAGGA
AATAGCCTAAATTTTTCTATACCTCCTTTCCCCTCTAGTTCTTTCCTTCC
TACCTAGTATTGCGGTTTGGAAGGGACTAGCGTAGAAAAAAGGTTGGAAG
GGTGGTAGACATCAGAACCCAATAAAGTAGCCCAGATAGTATGTATACAG
TTCACATACTGCCAGCATACAATGGCACAGGTTATACATTACCATTCCAA
ATGGGAAGATATGGAGCACATTGAGGGAATACTGGACCATAGTTATCCTG
ATTGCCAGCTGGGCTAACTCTGCGTTGTGCACCTCCATGTCTGATGTCCA
AGGGTTCTTCAGATCTCACTCCATTCATCCTTGGTTGACTCGGGGAGATC
ACACTTTCTCCCTCCTGGGCCGGCTTCACACCCAATCATGTTCTTTTCCC
GGGTCATTT
TATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTGTTCTGGATATTGATGTGGTTGGTACTC
ACAGTAACTCCATGAAGAGACTGCTACTATCTCACTTTACAAATGAGGAA
ACTGAGCCACTGAGCTCAAATGACCAAACTGTACAGAGTCTAAAACCAGG
CCATCTAGTGTGTAGATGAATTCATCCTTATATGCAAATGATAGATTCTT
CCTAGAAATGGCGATCAGGAACAAATGAGGAGGGTTAAAGGGCAGGTGAC
ATTAGAGCTCTTTGTACAGCGATTTGGAGAGCATCCTCGAATCCTCGGCA
GACTGAAAGTGGGATGCCCACTGACTCACAAGGGGACACAGGACACTACT
GAGAGCGACAGATGGACAGGTGAAACCAGTCAAGGGTCACACGTGATCAG
ATCACATAAGGGTGATCGGTAAATCGGACCATTCCCTTGCACGTGACTCG
TACACAGCCCTTTGTGGGGCTGCATAAGGATACTTGCCGATGGCGCGGGT
TTTGCTATGGATGCCAAATTCATAAACACCCCTCCCTTGTCCTTTTCCCC
AGATTCATCTTAATATTTCCTGTGTCCTTTTTGCCCATATTCCTGTCCTA
CGCCTAATTATTGCCCCCCTGTTTGCTATAAGTATTTAACCGTACTGCTT
GCCCTAGCACTTTTCTTCTCTCTTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_g04.g1 MSMg01no336_g04.g1 CHROMAT_FILE:
MSMg01no336_g04.g1 PHD_FILE: MSMg01no336_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:26 2005
         (238 letters)



>mm_chr4_83373077_83373712
          Length = 636

 Score =  410 bits (212), Expect = e-119
 Identities = 231/240 (96%), Gaps = 6/240 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgttctggatattgatgtggttggtactcacagtaactccatgaagagactgctacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cttgttctggatattgatgtggttggtactcacagtaactccatgaagagactgctacta 482

                                                                       
Query: 61  tctcactttacaaatgaggaaactgagccactgagctcaaatgaccaaactgtacagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctcactttacaaatgaggaaactgagccactgagctcaaatgaccaaactgtacagagt 422

                                                                       
Query: 121 c--taaaaccaggccatctagtgtgtagatgaattcatccttatatgcaaatgatagatt 178
           |  ||    |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 421 cagta----caggccatctagagtgtagatgaattcatccttatatgcaaatgatagagt 366

                                                                       
Query: 179 cttcctagaaatggcgatcaggaacaaatgaggagggttaaagggcaggtgacattagag 238
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttcctagaaatggctatcaggaacaaatgaggagggttaaagggcaggtgacattagag 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 636
Length adjustment: 9
Effective length of query: 229
Effective length of database: 627
Effective search space:   143583
Effective search space used:   143583
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)