BAC Information

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BAC

Clone NameMSMg01-336L08
Chromosome4 (Build37)
Map Location 133,229,590 - 133,229,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv
Downstream geneArid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336L08.T7 (MSMg01no336_l08.b1)MSMg01-336L08.TJ (MSMg01no336_l08.g1)
ACCAG451661AG451662
length776759
length of high quality
(start - end)
143 (75 - 217)242 (69 - 310)
definitionCHROMAT_FILE: MSMg01no336_l08.b1 PHD_FILE: MSMg01no336_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:51 2005CHROMAT_FILE: MSMg01no336_l08.g1 PHD_FILE: MSMg01no336_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAATC
CGCGGAATTCACAGATATTTCCCTGCCTCTATCTCCCAAGTATTGGGATT
AAAGGCATTTACCATTACGTCAGGCATTCAATATTTTTTTCCTATCTTCT
GTGTATACATGTATAGGGTACGCTATATATGTGCACTAATATATATATGT
GTGTGTGTGTGAAACACACATTTTGTTTTTCATTAACTGCTGCAANCCCC
CCTTTCAAAACAAACTTTTTCCCTTTGGAAGGAAATCCTTTTTGGAAAAT
TTTAATATAAAAGGTGGCTTGGGTCTCTCATAAAAAACCCCTCCCCCCTT
CTTTTTTTTTTTTTTTTCTTTCGCTTCTAATCACAACCCCTATGACTCTA
TTTTACACTTAGCCTATTACCACTCCTATCTCCTATTTTTTATTTCACTT
TCTACCATTAATTTAAATACTTTCCCCTATATTTCCTTCTTCTCGTGTCC
TCATCCCTATTTCTTCCTTCCTTTTTTTTTTTTCTCATTCTTCCTATTTT
ATAACTCCATTCTTCTTCTTTCTTCTTTTTTTTCCTTTTTCTCTTCCCAT
TCATATTTTTTTCTCGATCCCTCCGTTCCCTTTTTCTTACCTATTTTCCC
GCACATCTTTTCTTTCTCCTTTCTTTTTATTTCTTCCCCTCTACCCTATC
CCTTTTCCTTTCCTCATCCTTCTCTTTCCTTTACCCTCTTTCTTCATTAT
AATACTTTTATTTCCTCCCTCCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACGAAGCAAGGATGGTTTCTTTAAGGTCAGGG
TGCTGCGAAGACTGTAAGAAAGTCAAGTCACAACCTCGGGCCCTAGTCAC
AAGTGTGCCTAGAGAGGCACTGACATTTCACTCACAGGACTGGCAACAAA
TGCTTTCGGGGGGGGGGGGGGAGGAAAAATGACTTTGGAAACTCCTGTTT
TCTCTTTACCAGTCATTAAATTATACATTATCCACCTTACACGCAAACAT
CCAAGGGGCAGTTTATATCCCAGGGCCTGAGATGATATACAGACACAGCT
TCTGGCCCCCACCGAACTGATGAAGGCTAGTTTTTTTTGCTTTTCTTGTT
TTTTTTTTTTGCCTGGACAGATAGAGACCCATCTTCTTTGTTCCCACCCA
CACCCGTGGCCGCTGTATAACACAACCCCCTTTCTTCTTCACGGCTTTTT
TTCACGGCTAATCTACATCCTTTCTACCTTTGAGAGGCCCGACCCCCGAC
CATCTCTTTTGTCTTTGTATTTTCTTGATAACCCCAAACTCTTCCCTCTT
TCCCCCGCCCTTATTACCCCCCTCCCCCTTTAATATCTTACCCTCCCCCC
GCGCCTTTATTTCTTCCTATTACCTCTTATGCCCATCATATCGCCTATTA
CCTCTTCCTACTTACCCCCCTCTTTTTTATTCGTCCTCCACCCCTTCTCC
CTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_l08.g1 MSMg01no336_l08.g1 CHROMAT_FILE:
MSMg01no336_l08.g1 PHD_FILE: MSMg01no336_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:51 2005
         (242 letters)



>mm_chr4_133229390_133230033
          Length = 644

 Score =  460 bits (238), Expect = e-134
 Identities = 242/244 (99%), Gaps = 2/244 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgaagcaaggatggtttctttaaggtcagggtgctgcgaagactgtaagaaagtcaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acgaagcaaggatggtttctttaaggtcagggtgctgcgaagactgtaagaaagtcaagt 385

                                                                       
Query: 61  cacaacctcgggccctagtcacaagtgtgcctagagaggcactgacatttcactcacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaacctcgggccctagtcacaagtgtgcctagagaggcactgacatttcactcacagg 325

                                                                       
Query: 121 actggcaacaaatgctttcgggggg--ggggggggaggaaaaatgactttggaaactcct 178
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 324 actggcaacaaatgctttcggggggcgggggggggaggaaaaatgactttggaaactcct 265

                                                                       
Query: 179 gttttctctttaccagtcattaaattatacattatccaccttacacgcaaacatccaagg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttttctctttaccagtcattaaattatacattatccaccttacacgcaaacatccaagg 205

               
Query: 239 ggca 242
           ||||
Sbjct: 204 ggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 644
Length adjustment: 9
Effective length of query: 233
Effective length of database: 635
Effective search space:   147955
Effective search space used:   147955
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)