Query= MSMg01no337_f07.b1 MSMg01no337_f07.b1 CHROMAT_FILE:
MSMg01no337_f07.b1 PHD_FILE: MSMg01no337_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:41 2005
(509 letters)
>mm_chr4_109618507_109619415
Length = 909
Score = 907 bits (469), Expect = 0.0
Identities = 496/505 (98%)
Strand = Plus / Minus
Query: 5 gaattctttctactgcgttcataggactgaatgtggtaaagctgtagagagatcaccaaa 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctttctacagtgttcataggactgaatgtggtaaagctgtagagagatcaccaaa 650
Query: 65 ttaactataaaaatgtcaaagacaattttcaaatcagttattacccttcctgcaaagctc 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 649 ttaactataaaaatgtcaaagacaattttcgaatcagttattacccttcctgcaaagctc 590
Query: 125 agacccaactcatcttgaaactaagtccaaaatgagaccaactcattccacagaaaacct 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 589 agacccaactcatcttgaaactaagtccaaaatgagaccaactcattccacagaaaccct 530
Query: 185 ctctggtgtttggtctcatttccacacaatttcaggtgagtggattctactgtgtggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ctctggtgtttggtctcatttccacacaatttcaggtgagtggattctactgtgtggaaa 470
Query: 245 tactgaggtgaagaacatgcttccagaaaggaaggtagttctcaacaagccactgtagtt 304
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 469 tactgaggtgaagaacatgcttccagaaaggaaggtaggactcaacaagccactgtagtt 410
Query: 305 tcatccttgacacactggcatttaggggtaggtccaatagaggacgtgctagtccttctc 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 409 tcatccttgacacactggcatttagggataggtccaatagaggacgtgctagtccttctc 350
Query: 365 aggagagatctagaaacctaagagacttacagtcctgaggccttccctgtgggatgtcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggagagatctagaaacctaagagacttacagtcctgaggccttccctgtgggatgtcct 290
Query: 425 ttcctcacattcccacatttaattcctgaaaccaccccaaaagtggaggagtcagttcag 484
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 289 ttcctcacattcccacatttaattcctgaaaccaccccaaaggtggaggagtcagttcag 230
Query: 485 agagctcatgtgatcgactcagaga 509
|||||||||| ||||||||||||||
Sbjct: 229 agagctcatgcgatcgactcagaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_f07.g1 MSMg01no337_f07.g1 CHROMAT_FILE:
MSMg01no337_f07.g1 PHD_FILE: MSMg01no337_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:41 2005
(464 letters)
>mm_chr4_109437003_109437864
Length = 862
Score = 851 bits (440), Expect = 0.0
Identities = 458/464 (98%), Gaps = 2/464 (0%)
Strand = Plus / Plus
Query: 1 cttcaaacattccaccaacaaatatccagtgaaatttgtaaacaataaggtgttaatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcaaacattccaccaacaaatatccagtgaaatttgtaaacaataaggtgttaatgaa 260
Query: 61 ttggtatccttggnggagaaaatatttcaagaaaaaaatagaataggaaaaaagggaaca 120
||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 261 ttggtatccttgg-ggagaaaatatttcaag-aaaaaatagattaggaaaaaagggaaca 318
Query: 121 aaattaaaataaatgaaatgtaactgcatttttttttaaattgtagagagtgaagaactg 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 319 aaattaaaataaatgaaatgtaactgcattttttttttaattgtagagagtgaagaactg 378
Query: 181 gtgttagaaccagaacctcagttagtagaagttgtttgatcatgactgtatagtcatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgttagaaccagaacctcagttagtagaagttgtttgatcatgactgtatagtcatttg 438
Query: 241 cttagctggagcctcttctctgacttaacagagtcagtgcttgaataaataaataaacga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cttagctggagcctcttctctgacttaacagagtcagtgcttgaataaataaataaacga 498
Query: 301 ataatttatttcagtattaaactattatccctaggtccccaaatgtcacatacacgatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 499 ataatttatttcagtattaaactattatccctaggtccccaaatgtcacatacacgagta 558
Query: 361 ctaaggttgggtacggctgcaaatttcatcatggccctctgtagcaccatattatctttt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctaaggttgggtatggctgcaaatttcatcatggccctctgtagcaccatattatctttt 618
Query: 421 aacatttaagtattctccagccatctagtaagtaatatcccatt 464
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aacatttaagtattctccagccatctagtaagtaatatcccatt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 862
Length adjustment: 10
Effective length of query: 454
Effective length of database: 852
Effective search space: 386808
Effective search space used: 386808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
