BAC Information

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BAC

Clone NameMSMg01-337F18
Chromosome4 (Build37)
Map Location 106,831,295 - 106,831,916
singlet/doubletsinglet
Overlap gene2210012G02Rik
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2
Downstream geneTmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337F18.T7 (MSMg01no337_f18.b1)MSMg01-337F18.TJ (MSMg01no337_f18.g1)
ACCAG452153AG452154
length761773
length of high quality
(start - end)		616 (40 - 655)498 (68 - 565)
definitionCHROMAT_FILE: MSMg01no337_f18.b1 PHD_FILE: MSMg01no337_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:43 2005CHROMAT_FILE: MSMg01no337_f18.g1 PHD_FILE: MSMg01no337_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTCACTTTTCTGATTCCCAGAAACTCACTTCCAATATGTATTTCTAGTCT
AACAGTCTCATTTGAGCTGGACATTTCCATTAAAATAGTTTTAAAGAATT
CAAAATGCAGGCTGGGTGTGGTGGCACACACCTTTAATTTCAGTATTTGG
GAGGCAGAGGCAGGAGGATCTCCGTGAATTTGAGGCCAGCCTTTGTCTAC
AAAGTAAGTTGCAGGACACCAGTGCTGTTATACAGAGAAACCCTGTCTCA
AAAAAATCAAAATGATAAACTCTTACCAGTAAATGAACAAAGAACACAAA
TACTTGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAAGAAAAGAGAAAGGA
AAAGGACAAATGGCTGACAAGCCTATTACAAACACTTAGTCTACTTAGTA
AATGAAAATAAGAATCTATTTCTCTGACCTATCTATTTTTTGGCCTGTTG
GATTACTGAGAGTTTAAGAAAGATGTAGGCATGCAAATGAAGACAACATT
CCTAGGATGTAAGATTCCCACCCACATGGAGACAGGAAGCGCACAGAGCA
GTCTAGATGAAGGCCTTGGGTAGGCTGCTCGAGGCTGGGCTGCCCTTCCT
GAAGAAGCATCGTTGCTGGGGAAAATAGAAGCAGAGCTGGAAGGCAAGCA
GAGCATGGAGAATGCCGCCAACTCCTGGNCCTTTCCTCTCTTGGACAGGC
ACATTCTGCAC

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAAGATTTACCCGCCTCAGCCTCCTCAGTGCTG
GGGTTAAAGGCGTGGGCCACCATGCCCTTCAGCATTTTCAACTTTTGATA
TCTTTGACTTTCAGGGGGTTTATCAGGATATAATATTTGCCATCATGCCC
TGTGAGGAGCGGGTGTGGTGGCAGTCCCAAGAAGGCGCCAGGGACTGCAG
CTAAGTCTTATGACTTACACCTGACTTCCTCACCTGAATATAAGCCACAA
CCATCATGAGAGCTGCGCAGGTGTACCAGGATACTGGTGAATCCATTTTG
GTGGAGATATGCCCCTGCTGCCCTGATTAGCTGAAGCTGTGTACCTGGTG
AGGTGACGTGGCCTGCTGTGAGTGGATGAAGGCTGAGAGTATATAAGAGT
GAGAGGCCCGGGTTAGAGAGAGGATTATTATTCGAGAGAGGATTATTATT
GGGAGATATAGATGAAGAGAAAGAAGAGAGAGGAAGACTGAAGTTTGCTG
AATAAACTGCTGTTAGAAGGACTGGTGGCCGTGTCGGTCTTGCTGGTCGA
GAGCGGACGCTACAATGCCCTGATTCAGATCTAATTTATCTGGTATTAAC
AGGGGCTCCCTAACATATGGCCTCATAAAATTTGCTACTGTTTTGTAAAA
TCCTTATGCCNCCCTTTTTGAAATTGCATATTTGCGTATAATTGGTGAGA
TCTCACACCTGTCTAAAGGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_f18.b1 MSMg01no337_f18.b1 CHROMAT_FILE:
MSMg01no337_f18.b1 PHD_FILE: MSMg01no337_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:43 2005
         (616 letters)



>mm_chr4_106831101_106832116
          Length = 1016

 Score = 1122 bits (580), Expect = 0.0
 Identities = 608/622 (97%), Gaps = 10/622 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcacttttctgattcccagaaactcacttccaatatgtatttctagtctaac 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaattcattcacttttgtgattcccagaaactcacttccaatatgtatttctagtctaac 254

                                                                       
Query: 65  agtctcatttgagctggacatttccattaaaatagttttaaagaattcaaaatgcaggct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agtctcatttgagctggacatttccattaaaatagttttaaagaattcaaaatgcaggct 314

                                                                       
Query: 125 gggtgtggtggcacacacctttaatttcagtatttgggaggcagaggcaggaggatctcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gggtgtggtggcacacacctttaatttcagtatttgggaggcagaggcaggaggatctcc 374

                                                                       
Query: 185 gtgaatttgaggccagcctttgtctacaaagtaagttgcaggacaccagtgctgttatac 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 375 gtgaatttgaggccagcctttgtctacaaagtaaattgcaggacaccagtgctgttatac 434

                                                                       
Query: 245 agagaaaccctgtctcaaaaaaatcaaaatgataaactcttaccagtaaatgaacaaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agagaaaccctgtctcaaaaaaatcaaaatgataaactcttaccagtaaatgaacaaaga 494

                                                                       
Query: 305 acacaaatacttgagagagagagaga-a-agagagagagagagaa--------gaaaaga 354
           |||||||||||||||||||||||||| | ||||||||||||||||        |||||||
Sbjct: 495 acacaaatacttgagagagagagagagagagagagagagagagaaagagagaagaaaaga 554

                                                                       
Query: 355 gaaaggaaaaggacaaatggctgacaagcctattacaaacacttagtctacttagtaaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaaaggaaaaggacaaatggctgacaagcctattacaaacacttagtctacttagtaaat 614

                                                                       
Query: 415 gaaaataagaatctatttctctgacctatctattttttggcctgttggattactgagagt 474
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 gaaaataagaatttatttctctgacctatctattttttggcctattggattactgagagt 674

                                                                       
Query: 475 ttaagaaagatgtaggcatgcaaatgaagacaacattcctaggatgtaagattcccaccc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttaagaaagatgtaggcatgcaaatgaagacaacattcctaggatgtaagattcccaccc 734

                                                                       
Query: 535 acatggagacaggaagcgcacagagcagtctagatgaaggccttgggtaggctgctcgag 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 acatggagacaggaagcgcacagagcagtctagatgaaggccttgggtaggctgctcgag 794

                                 
Query: 595 gctgggctgcccttcctgaaga 616
           ||||||||||||||||||||||
Sbjct: 795 gctgggctgcccttcctgaaga 816


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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